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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g088880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 417aa MW: 47121.2 Da PI: 8.318 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.2 | 7.3e-19 | 70 | 159 | 4 | 95 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + +++ +l+++ l+lp +f++++++k ++ +++l+d + rsW + l+++k s+++++++GWk+F+++ng +g f++Fkl+++ +++++++ Csa09g088880.1 70 AHVTAASLETDALYLPQDFTSSNDLKRKC-CKIVLKDGEERSWAMDLRFNKLSDTCYISRGWKHFCDENGKYAGSFFTFKLMEN-GETPLLS 159 556788899999***********999655.6**************************************************985.4445555 PP | |||||||
2 | B3 | 59.6 | 5.6e-19 | 192 | 284 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f++ ++++d+lks+rl+lp +f++e+g++ +++++tl ++g +W +l r +sgr+ l+kG k+F +angLk g++++++l++ +++++v+ Csa09g088880.1 192 FVTLTLTNDSLKSSRLYLPLPFVRENGMN--NPRMVTLLGKDGIRWAANL-LRENSGRMSLGKGMKDFSRANGLKIGESFTLELIW-ENATPVLN 282 7788899*******************999..5669***************.799999*****************************.77778887 PP EE CS B3 96 vf 97 +f Csa09g088880.1 283 LF 284 76 PP | |||||||
3 | B3 | 55.8 | 8.4e-18 | 294 | 391 | 1 | 98 |
EEEE-..-HHHHTT-E....E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrl....vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f++ ++++d+l+++rl lp +f++e++++k++ ++ l ++g +W +l + ++gr+ l+kGWkeF+kangL++g +++++ ++ ++++ Csa09g088880.1 294 FVTLTVTHDSLNNNRLnlfqGLPLSFMRENDMNKPG--KIALLGKDGTKWIANL-LQESRGRMSLGKGWKEFAKANGLEVGVSFTLESIW-EDTT 384 7788999******999888899********999766..7***************.7999999*************************999.8888 PP .EEEEE- CS B3 92 lvvkvfr 98 +++++f+ Csa09g088880.1 385 PMLGLFS 391 9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-17 | 62 | 158 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-19 | 63 | 167 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.43E-14 | 67 | 160 | No hit | No description |
SMART | SM01019 | 2.2E-18 | 67 | 164 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.465 | 67 | 164 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-17 | 70 | 157 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-18 | 183 | 281 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-19 | 189 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.24E-18 | 191 | 285 | No hit | No description |
SMART | SM01019 | 2.0E-27 | 192 | 287 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-18 | 192 | 284 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.874 | 192 | 287 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-16 | 288 | 386 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.37E-16 | 291 | 387 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.15E-14 | 293 | 391 | No hit | No description |
SMART | SM01019 | 1.4E-21 | 294 | 393 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.069 | 294 | 393 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-17 | 294 | 391 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
KKKEKTPIVL RYSGAFYEQR LGHHRSNPEG VDMMIEDASD HHDNNIEYQR KKKVKQNNPE 60 TEPDCSCFVA HVTAASLETD ALYLPQDFTS SNDLKRKCCK IVLKDGEERS WAMDLRFNKL 120 SDTCYISRGW KHFCDENGKY AGSFFTFKLM ENGETPLLSV WPTKSENDRT HGDNNSSHSD 180 SDSTSPPNRN RFVTLTLTND SLKSSRLYLP LPFVRENGMN NPRMVTLLGK DGIRWAANLL 240 RENSGRMSLG KGMKDFSRAN GLKIGESFTL ELIWENATPV LNLFCKEVKI QNRFVTLTVT 300 HDSLNNNRLN LFQGLPLSFM RENDMNKPGK IALLGKDGTK WIANLLQESR GRMSLGKGWK 360 EFAKANGLEV GVSFTLESIW EDTTPMLGLF SIESTSDKRQ QGECCSNASE NKSIST* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g088880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010429453.1 | 0.0 | PREDICTED: B3 domain-containing protein REM12-like isoform X1 | ||||
Swissprot | P0CAP4 | 1e-103 | REM12_ARATH; B3 domain-containing protein REM12 | ||||
TrEMBL | A0A1J3JLQ3 | 0.0 | A0A1J3JLQ3_NOCCA; B3 domain-containing protein REM12 | ||||
STRING | XP_010429453.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7828 | 16 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24680.1 | 1e-99 | B3 family protein |