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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g088840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 655aa MW: 73058.7 Da PI: 10.4482 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.4 | 2.1e-21 | 79 | 174 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f +l+++ +l ++ l+lp + +++ g++ +s +++++de+ rsW + l+++k+s+++++t+GW++F+++ng k+g ++vFkl+g +++++v+++ Csa09g088840.1 79 FVALVTAWNLHKDTLSLPQDLTSSVGLQRSCS-EIVVTDERERSWPLDLRFNKSSETFYITRGWRSFCNENGKKAGGVFVFKLVG-NRETPVLSF 171 5678999999*****************98887.***************************************************9.666699999 PP E-S CS B3 97 frk 99 +++ Csa09g088840.1 172 CST 174 986 PP | |||||||
2 | B3 | 59.9 | 4.4e-19 | 215 | 308 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + ++++++lk+gr +lp +f++++ ++k++ ++tl + g +W+ l+ r g++vl+kGW++Fv+angL +g +++++ ++ +++++++++ Csa09g088840.1 215 VALTLTHNSLKKGRQYLPSSFVRKNVLDKHG--MITLLGKAGMKWRASLK-REANGSMVLGKGWRDFVNANGLTSGKSFTLEAIS-EKGTPMLSL 305 566778999****************999766..8***************4.5555569************************998.8999***99 PP E-S CS B3 97 frk 99 +++ Csa09g088840.1 306 CST 308 986 PP | |||||||
3 | B3 | 35.1 | 2.4e-11 | 362 | 431 | 3 | 75 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 + + ++ +l +gr +lp +fa ++g++k++ +tl e+g +We +l r+k+g++ l+kGW++F +an ++ Csa09g088840.1 362 TLTQTHANLIKGRQYLPLSFAIANGLDKPG--IITLVGEDGAKWEANL-LRGKRGTMCLGKGWRHFTRANSIN 431 55556677778999*************776..8***************.7888899**************875 PP | |||||||
4 | B3 | 52.9 | 6.7e-17 | 479 | 573 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f++ ++++d+l +gr +lp +f++e+g++k++ ++ l ++g +We ++ r+k g++ ++kGWk+F+ angLk+g++++++ + ++++++++ Csa09g088840.1 479 FVTLTLRHDNLITGRRYLPFSFTRENGLDKPG--KINLIGKDGTKWEANI-GRGKTGMMCIGKGWKDFAIANGLKSGESFTLEAIL-ENGTPMLS 569 667778899999*****************777..7***************.68888889************************776.88889999 PP EE-S CS B3 96 vfrk 99 +f++ Csa09g088840.1 570 LFST 573 9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.8E-21 | 71 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.04E-20 | 74 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.46E-15 | 78 | 173 | No hit | No description |
PROSITE profile | PS50863 | 14.452 | 78 | 174 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.8E-20 | 79 | 174 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-29 | 79 | 175 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-20 | 205 | 315 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.59E-20 | 209 | 309 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.31E-16 | 213 | 307 | No hit | No description |
PROSITE profile | PS50863 | 14.917 | 214 | 309 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-18 | 214 | 308 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-28 | 214 | 309 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.69E-13 | 358 | 431 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.897 | 360 | 454 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-10 | 360 | 431 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-9 | 360 | 455 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.04E-11 | 360 | 430 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.8E-12 | 360 | 431 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-14 | 469 | 568 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-16 | 476 | 566 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.79E-16 | 478 | 572 | No hit | No description |
PROSITE profile | PS50863 | 14.311 | 479 | 574 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.6E-16 | 479 | 573 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-27 | 479 | 574 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.3E-6 | 611 | 649 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 655 aa Download sequence Send to blast |
MVLNLSDFGL CYYENQDLPA PSSNNDQDKT GNISRKKLRR MRTDEGDDYQ DNTEHVRKKK 60 MKNNLDTEVD SSSSDHSCFV ALVTAWNLHK DTLSLPQDLT SSVGLQRSCS EIVVTDERER 120 SWPLDLRFNK SSETFYITRG WRSFCNENGK KAGGVFVFKL VGNRETPVLS FCSTESVNDG 180 TQGDKNNKEN CVQLERKQKR MRFRVSTLSS QNRFVALTLT HNSLKKGRQY LPSSFVRKNV 240 LDKHGMITLL GKAGMKWRAS LKREANGSMV LGKGWRDFVN ANGLTSGKSF TLEAISEKGT 300 PMLSLCSTQS TSDRSQQREC SKAFEKESIS TKPSSGNKMR KAKDKRERRR DSLPASMNRF 360 VTLTQTHANL IKGRQYLPLS FAIANGLDKP GIITLVGEDG AKWEANLLRG KRGTMCLGKG 420 WRHFTRANSI NPQVIETSNS KDSEKESILA GHSSGKETRK AKDKIEGRRD SLPASMNRFV 480 TLTLRHDNLI TGRRYLPFSF TRENGLDKPG KINLIGKDGT KWEANIGRGK TGMMCIGKGW 540 KDFAIANGLK SGESFTLEAI LENGTPMLSL FSTEATSGRS QQGELCKDSE KGSIAAEPTS 600 RNKATSNREE RRDSSSTINN RFVRLTLAPE DVRDCKLIIP SQFMKANGIN KLGG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 61 | RKKLRRMRTDEGDDYQDNTEHVRKKKMK |
2 | 338 | 345 | MRKAKDKR |
3 | 339 | 346 | RKAKDKRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g088840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019094010.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein REM12-like | ||||
Swissprot | P0CAP4 | 1e-164 | REM12_ARATH; B3 domain-containing protein REM12 | ||||
TrEMBL | A0A1P8AXF8 | 0.0 | A0A1P8AXF8_ARATH; Transcriptional factor B3 family protein | ||||
STRING | XP_010417224.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7828 | 16 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24680.1 | 1e-155 | B3 family protein |