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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g087130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bZIP | ||||||||
Protein Properties | Length: 228aa MW: 26229.4 Da PI: 6.6353 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.7 | 7.8e-11 | 127 | 173 | 3 | 49 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 e+++ +r+++NRe+A+rsR RK+ ie+L+e++ L eN++L ++l Csa09g087130.1 127 EDRKRKRMESNRESAKRSRMRKQRHIENLKEEANRLGLENRELGNRL 173 68999***********************************9997655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.4E-12 | 125 | 189 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.4E-10 | 126 | 173 | No hit | No description |
Pfam | PF00170 | 1.4E-8 | 127 | 173 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.048 | 127 | 173 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.32E-9 | 129 | 176 | No hit | No description |
CDD | cd14702 | 2.63E-16 | 130 | 177 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 132 | 147 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MMSTLPAFSF TEPGLVNQIS DFQTGFTPWE LDGFTDLFFS TIHHEPAVPS PCTGESDTVK 60 INIDFNGFDE SCIGSIKTNS GSDDSDIFHG VPSPTSDELD SDNTRTRINA TDHNRTKLNR 120 PVLQVTEDRK RKRMESNRES AKRSRMRKQR HIENLKEEAN RLGLENRELG NRLRIVLYNM 180 GLISTDNDRL MSEQENLRRR FLEMRQILIL RQLQQNPSLI INHHQML* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 146 | KRSRMR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g087130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004786 | 0.0 | AC004786.3 Arabidopsis thaliana chromosome 2 clone T20K9 map CIC06C07, complete sequence. | |||
GenBank | BT010929 | 0.0 | BT010929.1 Arabidopsis thaliana At2g22850 gene, complete cds. | |||
GenBank | BT011649 | 0.0 | BT011649.1 Arabidopsis thaliana At2g22850 mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019085711.1 | 1e-167 | PREDICTED: basic leucine zipper 43-like | ||||
TrEMBL | D7LE49 | 1e-136 | D7LE49_ARALL; BZIP transcription factor family protein | ||||
STRING | XP_010472282.1 | 1e-153 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7855 | 18 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22850.2 | 1e-128 | basic leucine-zipper 6 |