PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g086620.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

CAMTA

Protein Properties

Length: 1565aa MW: 176354 Da PI: 5.6271

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g086620.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	181.7	8.3e-57	20	136	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl++ ei++iL+n++++++++e++t+p+sgs+++++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+++n++fqr Csa09g086620.1 20 SEaRHRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFMFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGQDNENFQR 114 4449***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+ywlL+eel++iv+vhylevk Csa09g086620.1 115 RSYWLLQEELSHIVFVHYLEVK 136 *****************985 PP
2	CG-1	181.7	8.3e-57	316	432	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl++ ei++iL+n++++++++e++t+p+sgs+++++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+++n++fqr Csa09g086620.1 316 SEaRHRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFMFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGQDNENFQR 410 4449***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+ywlL+eel++iv+vhylevk Csa09g086620.1 411 RSYWLLQEELSHIVFVHYLEVK 432 *****************985 PP
3	CG-1	54.7	2e-17	779	821	76	118
CG-1 76 ggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 g+v+vl+cyYah+++n++fqrr+ywlL+eel++iv+vhylevk Csa09g086620.1 779 GSVDVLHCYYAHGQDNENFQRRSYWLLQEELSHIVFVHYLEVK 821 78**************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.708	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.4E-85	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.7E-49	21	135	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	82.708	311	437	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.4E-85	314	432	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.7E-49	317	431	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	23.467	689	826	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.2E-6	694	821	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.4E-13	778	820	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.85E-11	1012	1082	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	2.18E-15	1166	1288	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.30E-10	1173	1285	No hit	No description
PROSITE profile	PS50297	16.228	1176	1285	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.1E-15	1178	1289	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.164	1226	1258	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.98E-8	1381	1434	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.92	1383	1405	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.974	1385	1411	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0066	1386	1404	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0054	1406	1428	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.432	1407	1431	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0012	1409	1428	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1565 aa Download sequence Send to blast
MAEARRFSPV SELDVGQILS EARHRWLRPP EICEILQNYQ RFQISTEPPT TPSSGSVFMF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE NFQRRSYWLL 120 QEELSHIVFV HYLEVKGSRV STSFSRMQKT EDATRSPQET GEALSSEHDG YASCSFNQND 180 HSNHSQTTDS ASVNGFHTPE LEDAESAYNQ HGSSIVYSHQ ELQQPATRGN LTGFDPYYQV 240 SLTPRDNYQK EFRTVPITHS SVMVDKSKTI NSPGVTNGLR NKKSIDSQTW EEILGNCGSG 300 AEGLPLQPNN VGQILSEARH RWLRPPEICE ILQNYQRFQI STEPPTTPSS GSVFMFDRKV 360 LRYFRKDGHN WRKKKDGKTV KEAHERLKAG SVDVLHCYYA HGQDNENFQR RSYWLLQEEL 420 SHIVFVHYLE VKGSRVSTSF SRMQKTEDAT RSPQETGEAL SSEHDGYASC SFNQNDHSNH 480 SQTTDSASVN GFHTPELEDA ESAYNQHGSS IVYSHQELQQ PATRGNLTGF DPYYQVSLTP 540 RDNYQKEFRT VPITHSSVMV DKSKTINSPG VTNGLRNKKS IDSQTWEEIL GNCGSGAEGL 600 PLQPNSEHEV LDQILQSSSF TMQDFASLQE SMIKSGNQEL NLGVTSDHTV WFQGQDIEPN 660 AISNLASNEK APYLSTMKQH LLDGALGEEG LKKMDSFNRW MSKELGDVGV IADANESYTQ 720 SSSRTYWEEV ESEDGSNGHN SRRELDGYVM SPSLSKEQLF SISDFSPSWA YVGCEVVAGS 780 VDVLHCYYAH GQDNENFQRR SYWLLQEELS HIVFVHYLEV KGSRVSTSFS RMQKTEDATR 840 SPQETGEALS SEHDGYASCS FNQNDHSNHS QTTDSASVNG FHTPELEDAE SAYNQHGSSI 900 VYSHQELQQP ATRGNLTGFD PYYQVSLTPR DNYQKEFRTV PITHSSVMXT VSGNDSDLSQ 960 VSEKISLLLF ENDDQLDQML MNEISQENMK KNLLQEFLKE SLXSLQAGRM WAVFVTGKFL 1020 KTREEAEIGE WSCMFGQTEV PADVIANGVL QCVAPMHEAG RVPFYVTCSN RLACSEVREF 1080 EYKVAETQIF DRETDDESTI DILEARFVKL LCSKSESSSA VSGNDSDLSQ VSEKISLLLF 1140 ENDDQLDQML MNEISQENMK KNLLQEFLKE SLHSWLLQKI AEGGKGPSVL DEGGQGVLHF 1200 AASLGYNWAL EPTILAGVSV DFRDVNGWTA LHWAAFFGRE RIIGSLIALG AAPGTLTDPN 1260 PDFPSGSTPS DLAYTNGHKG IAGYLSEYAL RAHVSLLSLN DSNAETVETA PSPSSSSLTD 1320 SLTAVRNATQ AAARIHQVFR AQSFQKKQLK ELGDRKLGMS EERALSMLAP KTHKSGRAHS 1380 DDSVQAAAIR IQNKFRGYKG RKDYLITRQR IIRIQAHVRG YQVRKNYRKI IWSVGILEKV 1440 ILRWRRKGAG LRGFKSDALV DNRMQDETEK EEDDDFFKQG RKQTEERLQK ALARVKSMVQ 1500 YPEARDQYRR LLNVVNDIQE SKVEKALENS EGAACFDDDL IDIEALLGDD DTLMLPMSSS 1560 LWTN*

Sequence ? help Back to Top

Protein Sequence Length: 1565 aa Download sequence Send to blast

MAEARRFSPV SELDVGQILS EARHRWLRPP EICEILQNYQ RFQISTEPPT TPSSGSVFMF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE NFQRRSYWLL  120
QEELSHIVFV HYLEVKGSRV STSFSRMQKT EDATRSPQET GEALSSEHDG YASCSFNQND  180
HSNHSQTTDS ASVNGFHTPE LEDAESAYNQ HGSSIVYSHQ ELQQPATRGN LTGFDPYYQV  240
SLTPRDNYQK EFRTVPITHS SVMVDKSKTI NSPGVTNGLR NKKSIDSQTW EEILGNCGSG  300
AEGLPLQPNN VGQILSEARH RWLRPPEICE ILQNYQRFQI STEPPTTPSS GSVFMFDRKV  360
LRYFRKDGHN WRKKKDGKTV KEAHERLKAG SVDVLHCYYA HGQDNENFQR RSYWLLQEEL  420
SHIVFVHYLE VKGSRVSTSF SRMQKTEDAT RSPQETGEAL SSEHDGYASC SFNQNDHSNH  480
SQTTDSASVN GFHTPELEDA ESAYNQHGSS IVYSHQELQQ PATRGNLTGF DPYYQVSLTP  540
RDNYQKEFRT VPITHSSVMV DKSKTINSPG VTNGLRNKKS IDSQTWEEIL GNCGSGAEGL  600
PLQPNSEHEV LDQILQSSSF TMQDFASLQE SMIKSGNQEL NLGVTSDHTV WFQGQDIEPN  660
AISNLASNEK APYLSTMKQH LLDGALGEEG LKKMDSFNRW MSKELGDVGV IADANESYTQ  720
SSSRTYWEEV ESEDGSNGHN SRRELDGYVM SPSLSKEQLF SISDFSPSWA YVGCEVVAGS  780
VDVLHCYYAH GQDNENFQRR SYWLLQEELS HIVFVHYLEV KGSRVSTSFS RMQKTEDATR  840
SPQETGEALS SEHDGYASCS FNQNDHSNHS QTTDSASVNG FHTPELEDAE SAYNQHGSSI  900
VYSHQELQQP ATRGNLTGFD PYYQVSLTPR DNYQKEFRTV PITHSSVMXT VSGNDSDLSQ  960
VSEKISLLLF ENDDQLDQML MNEISQENMK KNLLQEFLKE SLXSLQAGRM WAVFVTGKFL  1020
KTREEAEIGE WSCMFGQTEV PADVIANGVL QCVAPMHEAG RVPFYVTCSN RLACSEVREF  1080
EYKVAETQIF DRETDDESTI DILEARFVKL LCSKSESSSA VSGNDSDLSQ VSEKISLLLF  1140
ENDDQLDQML MNEISQENMK KNLLQEFLKE SLHSWLLQKI AEGGKGPSVL DEGGQGVLHF  1200
AASLGYNWAL EPTILAGVSV DFRDVNGWTA LHWAAFFGRE RIIGSLIALG AAPGTLTDPN  1260
PDFPSGSTPS DLAYTNGHKG IAGYLSEYAL RAHVSLLSLN DSNAETVETA PSPSSSSLTD  1320
SLTAVRNATQ AAARIHQVFR AQSFQKKQLK ELGDRKLGMS EERALSMLAP KTHKSGRAHS  1380
DDSVQAAAIR IQNKFRGYKG RKDYLITRQR IIRIQAHVRG YQVRKNYRKI IWSVGILEKV  1440
ILRWRRKGAG LRGFKSDALV DNRMQDETEK EEDDDFFKQG RKQTEERLQK ALARVKSMVQ  1500
YPEARDQYRR LLNVVNDIQE SKVEKALENS EGAACFDDDL IDIEALLGDD DTLMLPMSSS  1560
LWTN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g086620.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF506697	0.0	AF506697.1 Arabidopsis thaliana calmodulin-binding transcription factor SR1 (SR1) mRNA, complete cds.
GenBank	AK226486	0.0	AK226486.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 3, complete cds, clone: RAFL06-74-H09.
GenBank	AY510025	0.0	AY510025.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 1 mRNA, complete cds.
GenBank	BT002459	0.0	BT002459.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010416993.1	0.0	PREDICTED: calmodulin-binding transcription activator 3-like
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A078FKT8	0.0	A0A078FKT8_BRANA; BnaA09g42730D protein
STRING	XP_010416993.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8601	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]