PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa09g086620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 1565aa MW: 176354 Da PI: 5.6271 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 181.7 | 8.3e-57 | 20 | 136 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl++ ei++iL+n++++++++e++t+p+sgs+++++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+++n++fqr Csa09g086620.1 20 SEaRHRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFMFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGQDNENFQR 114 4449******************************************************************************************* PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+ywlL+eel++iv+vhylevk Csa09g086620.1 115 RSYWLLQEELSHIVFVHYLEVK 136 *******************985 PP | |||||||
2 | CG-1 | 181.7 | 8.3e-57 | 316 | 432 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl++ ei++iL+n++++++++e++t+p+sgs+++++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+++n++fqr Csa09g086620.1 316 SEaRHRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFMFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGQDNENFQR 410 4449******************************************************************************************* PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+ywlL+eel++iv+vhylevk Csa09g086620.1 411 RSYWLLQEELSHIVFVHYLEVK 432 *******************985 PP | |||||||
3 | CG-1 | 54.7 | 2e-17 | 779 | 821 | 76 | 118 |
CG-1 76 ggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 g+v+vl+cyYah+++n++fqrr+ywlL+eel++iv+vhylevk Csa09g086620.1 779 GSVDVLHCYYAHGQDNENFQRRSYWLLQEELSHIVFVHYLEVK 821 78**************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 82.708 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.4E-85 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.7E-49 | 21 | 135 | IPR005559 | CG-1 DNA-binding domain |
PROSITE profile | PS51437 | 82.708 | 311 | 437 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.4E-85 | 314 | 432 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.7E-49 | 317 | 431 | IPR005559 | CG-1 DNA-binding domain |
PROSITE profile | PS51437 | 23.467 | 689 | 826 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.2E-6 | 694 | 821 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.4E-13 | 778 | 820 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 1.85E-11 | 1012 | 1082 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 2.18E-15 | 1166 | 1288 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.30E-10 | 1173 | 1285 | No hit | No description |
PROSITE profile | PS50297 | 16.228 | 1176 | 1285 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.1E-15 | 1178 | 1289 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.164 | 1226 | 1258 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 3.98E-8 | 1381 | 1434 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.92 | 1383 | 1405 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.974 | 1385 | 1411 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0066 | 1386 | 1404 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0054 | 1406 | 1428 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.432 | 1407 | 1431 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0012 | 1409 | 1428 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1565 aa Download sequence Send to blast |
MAEARRFSPV SELDVGQILS EARHRWLRPP EICEILQNYQ RFQISTEPPT TPSSGSVFMF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE NFQRRSYWLL 120 QEELSHIVFV HYLEVKGSRV STSFSRMQKT EDATRSPQET GEALSSEHDG YASCSFNQND 180 HSNHSQTTDS ASVNGFHTPE LEDAESAYNQ HGSSIVYSHQ ELQQPATRGN LTGFDPYYQV 240 SLTPRDNYQK EFRTVPITHS SVMVDKSKTI NSPGVTNGLR NKKSIDSQTW EEILGNCGSG 300 AEGLPLQPNN VGQILSEARH RWLRPPEICE ILQNYQRFQI STEPPTTPSS GSVFMFDRKV 360 LRYFRKDGHN WRKKKDGKTV KEAHERLKAG SVDVLHCYYA HGQDNENFQR RSYWLLQEEL 420 SHIVFVHYLE VKGSRVSTSF SRMQKTEDAT RSPQETGEAL SSEHDGYASC SFNQNDHSNH 480 SQTTDSASVN GFHTPELEDA ESAYNQHGSS IVYSHQELQQ PATRGNLTGF DPYYQVSLTP 540 RDNYQKEFRT VPITHSSVMV DKSKTINSPG VTNGLRNKKS IDSQTWEEIL GNCGSGAEGL 600 PLQPNSEHEV LDQILQSSSF TMQDFASLQE SMIKSGNQEL NLGVTSDHTV WFQGQDIEPN 660 AISNLASNEK APYLSTMKQH LLDGALGEEG LKKMDSFNRW MSKELGDVGV IADANESYTQ 720 SSSRTYWEEV ESEDGSNGHN SRRELDGYVM SPSLSKEQLF SISDFSPSWA YVGCEVVAGS 780 VDVLHCYYAH GQDNENFQRR SYWLLQEELS HIVFVHYLEV KGSRVSTSFS RMQKTEDATR 840 SPQETGEALS SEHDGYASCS FNQNDHSNHS QTTDSASVNG FHTPELEDAE SAYNQHGSSI 900 VYSHQELQQP ATRGNLTGFD PYYQVSLTPR DNYQKEFRTV PITHSSVMXT VSGNDSDLSQ 960 VSEKISLLLF ENDDQLDQML MNEISQENMK KNLLQEFLKE SLXSLQAGRM WAVFVTGKFL 1020 KTREEAEIGE WSCMFGQTEV PADVIANGVL QCVAPMHEAG RVPFYVTCSN RLACSEVREF 1080 EYKVAETQIF DRETDDESTI DILEARFVKL LCSKSESSSA VSGNDSDLSQ VSEKISLLLF 1140 ENDDQLDQML MNEISQENMK KNLLQEFLKE SLHSWLLQKI AEGGKGPSVL DEGGQGVLHF 1200 AASLGYNWAL EPTILAGVSV DFRDVNGWTA LHWAAFFGRE RIIGSLIALG AAPGTLTDPN 1260 PDFPSGSTPS DLAYTNGHKG IAGYLSEYAL RAHVSLLSLN DSNAETVETA PSPSSSSLTD 1320 SLTAVRNATQ AAARIHQVFR AQSFQKKQLK ELGDRKLGMS EERALSMLAP KTHKSGRAHS 1380 DDSVQAAAIR IQNKFRGYKG RKDYLITRQR IIRIQAHVRG YQVRKNYRKI IWSVGILEKV 1440 ILRWRRKGAG LRGFKSDALV DNRMQDETEK EEDDDFFKQG RKQTEERLQK ALARVKSMVQ 1500 YPEARDQYRR LLNVVNDIQE SKVEKALENS EGAACFDDDL IDIEALLGDD DTLMLPMSSS 1560 LWTN* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa09g086620.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF506697 | 0.0 | AF506697.1 Arabidopsis thaliana calmodulin-binding transcription factor SR1 (SR1) mRNA, complete cds. | |||
GenBank | AK226486 | 0.0 | AK226486.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 3, complete cds, clone: RAFL06-74-H09. | |||
GenBank | AY510025 | 0.0 | AY510025.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 1 mRNA, complete cds. | |||
GenBank | BT002459 | 0.0 | BT002459.1 Arabidopsis thaliana Unknown protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010416993.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 3-like | ||||
Swissprot | Q8GSA7 | 0.0 | CMTA3_ARATH; Calmodulin-binding transcription activator 3 | ||||
TrEMBL | A0A078FKT8 | 0.0 | A0A078FKT8_BRANA; BnaA09g42730D protein | ||||
STRING | XP_010416993.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8601 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22300.2 | 0.0 | signal responsive 1 |