PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g086530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 264aa    MW: 30039.7 Da    PI: 9.062
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g086530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-1987135355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+WvAeIr p++   r+r +lg+f tae+Aa a+++a+ +l+g
  Csa09g086530.1  87 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEKAALAYDRAAFQLRG 135
                     9******9.**********965...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-2286144IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-3186144IPR001471AP2/ERF domain
SMARTSM003801.5E-3686149IPR001471AP2/ERF domain
PROSITE profilePS5103222.66986143IPR001471AP2/ERF domain
PRINTSPR003676.5E-118798IPR001471AP2/ERF domain
PfamPF008471.4E-1387135IPR001471AP2/ERF domain
CDDcd000183.38E-3287145No hitNo description
PRINTSPR003676.5E-11109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAAIDMFTSN KDLYFNSLIE TAPISFRESN ASSGFNQPKP LGLNQLTQYQ IHQIQNQLNH  60
RRTTTISKRI RTKSFSPSSS FKTKNLYRGV RQRHWGKWVA EIRLPKNRTR LWLGTFETAE  120
KAALAYDRAA FQLRGDISKL NFPNLRHEDV NPLPSSVDAK LQAICKSLRK TEEAGSVSDQ  180
TEEETCSVSD KTEFFLPKTE FVLPKTEHFE FSDVSSRTDK SSSSNITFLD FWDSDFEKTG  240
SFGLVKFPSV EIDWDAISKL SDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2287143360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g086530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010429137.10.0PREDICTED: ethylene-responsive transcription factor ERF056-like
SwissprotQ9SIE41e-125ERF56_ARATH; Ethylene-responsive transcription factor ERF056
TrEMBLR0G1431e-128R0G143_9BRAS; Uncharacterized protein
STRINGXP_010429137.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.11e-111ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]