PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g084730.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 278aa    MW: 31909.4 Da    PI: 6.2664
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g084730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.12.2e-233382150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krie ++nrq+t+skR++g++KKA+ELS+LCd++ a+++fs++++l  +s
  Csa09g084730.1 33 KRIEKSTNRQITYSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCLFS 82
                    79*****************************************9997765 PP
2K-box16.53.5e-071502141377
           K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 
                     + e l+qe+ +L+++++  ++e+R++  + +   s++e++  e +L + l+++ +++++ll ++ 
  Csa09g084730.1 150 DVEALEQEVCRLQEQLQISEEELRKFEPDPVRFTSMEEIEACEAHLINTLTRVVQRREHLLNKSC 214
                     57899*******************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.7912585IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-302584IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-2626105IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002781IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-212747IPR002100Transcription factor, MADS-box
PfamPF003196.8E-223479IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-214762IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-216283IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSINGSDVRS PYMTDLSKFL SIGYMGRVKL ELKRIEKSTN RQITYSKRKK GLIKKAYELS  60
TLCDIDLALL MFSPSDRLCL FSGQKRIEDV FARYINLPDQ ERENAIVFPD QSKRQLGIQH  120
KEYLLRTLEQ LKTQEDMALH INEPRPVLSD VEALEQEVCR LQEQLQISEE ELRKFEPDPV  180
RFTSMEEIEA CEAHLINTLT RVVQRREHLL NKSCKAPSTQ QSIEGIPINN VVEGWSVAEP  240
EQANMIASLA HHSNQLSYDD LLLQGSSQGR ESSFVRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A7e-1625115192MEF2 CHIMERA
6bz1_B7e-1625115192MEF2 CHIMERA
6bz1_C7e-1625115192MEF2 CHIMERA
6bz1_D7e-1625115192MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g084730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0121281e-176BT012128.1 Arabidopsis thaliana At1g77950 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428898.10.0PREDICTED: agamous-like MADS-box protein AGL104 isoform X1
SwissprotQ1PFC21e-97AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLR0I8161e-141R0I816_9BRAS; Uncharacterized protein
STRINGXP_010428898.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.21e-133AGAMOUS-like 67
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]