PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TALE

Protein Properties

Length: 538aa MW: 61548.7 Da PI: 6.855

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g080030.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.7	1.1e-09	380	417	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ L+k++gL+++qV +WF N R + Csa09g080030.1 380 FEHflHPYPKESEKIMLSKQTGLSKNQVANWFINARVR 417 665559******************************88 PP
2	BELL	125.3	2.3e-40	243	314	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kLl++++eVdkrY+qy++q+++++ssFe+v+glg+akpYts+Al++iSrhFrcL+dai+eqi Csa09g080030.1 243 ERQELQNKKSKLLTMVDEVDKRYNQYHHQMEALASSFEMVTGLGAAKPYTSVALNRISRHFRCLRDAIKEQI 314 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.2E-51	173	312	IPR006563	POX domain
Pfam	PF07526	5.5E-48	179	310	IPR006563	POX domain
PROSITE profile	PS50071	12.066	358	421	IPR001356	Homeobox domain
CDD	cd00086	6.33E-11	361	422	No hit	No description
SMART	SM00389	1.9E-9	361	425	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.55E-17	362	428	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.9E-28	364	427	IPR009057	Homeodomain-like
Pfam	PF05920	1.8E-17	378	417	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MAVYYPNSVG MQSMYHESIY LNEQQQQQQQ QATSSSAASF SEIVSGDVRH NNEMVFIPPT 60 TSDVAVNGNV TVSSNDLSFH GGGLSLSLGN QIQSAVSVSP FQYHYQNLSN QLNYNNASTM 120 SPDENGKSLS GHHHHHHHHQ QQQHHSDQMI PSSGYNNNNN GVGFYNNYRY ETSGFVSSVL 180 RSRYLKPTQQ LLDEVVSVRK ELKLGNKKMK NNDKGQDFQN GSSDNNITED EKPQQSQELS 240 PSERQELQNK KSKLLTMVDE VDKRYNQYHH QMEALASSFE MVTGLGAAKP YTSVALNRIS 300 RHFRCLRDAI KEQIQVIRGK LGERETSDEQ GERIPRLRYL DQRLRQQRAL HQQLGMVRPA 360 WRPQRGLPEN SVSILRAWLF EHFLHPYPKE SEKIMLSKQT GLSKNQVANW FINARVRLWK 420 PMIEEMYKEE FGDSELETNS NQDNNKTQET SQLKHEESSS QQHNQGNINN NNIAYTSHGE 480 ENLVFADPKP DRATTGEYDS LMNYHGFGID DYNRYVGLGN QQDARFSNPH QLHDFVV*

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MAVYYPNSVG MQSMYHESIY LNEQQQQQQQ QATSSSAASF SEIVSGDVRH NNEMVFIPPT  60
TSDVAVNGNV TVSSNDLSFH GGGLSLSLGN QIQSAVSVSP FQYHYQNLSN QLNYNNASTM  120
SPDENGKSLS GHHHHHHHHQ QQQHHSDQMI PSSGYNNNNN GVGFYNNYRY ETSGFVSSVL  180
RSRYLKPTQQ LLDEVVSVRK ELKLGNKKMK NNDKGQDFQN GSSDNNITED EKPQQSQELS  240
PSERQELQNK KSKLLTMVDE VDKRYNQYHH QMEALASSFE MVTGLGAAKP YTSVALNRIS  300
RHFRCLRDAI KEQIQVIRGK LGERETSDEQ GERIPRLRYL DQRLRQQRAL HQQLGMVRPA  360
WRPQRGLPEN SVSILRAWLF EHFLHPYPKE SEKIMLSKQT GLSKNQVANW FINARVRLWK  420
PMIEEMYKEE FGDSELETNS NQDNNKTQET SQLKHEESSS QQHNQGNINN NNIAYTSHGE  480
ENLVFADPKP DRATTGEYDS LMNYHGFGID DYNRYVGLGN QQDARFSNPH QLHDFVV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-15	367	425	5	63	Homeobox protein Meis2
3k2a_B	2e-15	367	425	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:16513846}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g080030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF353093	0.0	AF353093.1 Arabidopsis thaliana BEL1-like homeodomain 3 (BLH3) mRNA, complete cds.
GenBank	AY062545	0.0	AY062545.1 Arabidopsis thaliana Similar to homeodomain proteins (At1g75410; F1B16.6) mRNA, complete cds.
GenBank	AY085278	0.0	AY085278.1 Arabidopsis thaliana clone 142443 mRNA, complete sequence.
GenBank	AY598452	0.0	AY598452.1 Arabidopsis thaliana BEL1-like homeodomain 3 protein mRNA, complete cds.
GenBank	BT000133	0.0	BT000133.1 Arabidopsis thaliana Similar to homeodomain proteins (At1g75410) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010428562.1	0.0	PREDICTED: BEL1-like homeodomain protein 3
Swissprot	Q9FWS9	0.0	BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBL	R0IEB0	0.0	R0IEB0_9BRAS; Uncharacterized protein
STRING	XP_010428562.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3820	19	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75410.2	0.0	BEL1-like homeodomain 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]