PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g079950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 413aa    MW: 44536.7 Da    PI: 8.664
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g079950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.25.1e-12326327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     elCr+f+r G C+yG++CkF H++
  Csa09g079950.1  3 KELCRNFQR-GSCRYGENCKFLHPQ 26
                    69*******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.8E-8126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.056127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-8326IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MRKELCRNFQ RGSCRYGENC KFLHPQQAKP NNPFGFGSQQ QPQQQQQQQQ KSSNPFGFGV  60
QSGGGGSSRP NQFQPFENTW SRTGSTPNAA GGASAQQTGG KQTQSADHKC TDPAACKRVM  120
QDDFKNERPM WKLTCYGHWK YFPCDVTGDI SYEELRAMAY DEAKRGIPLQ SIVERERNLQ  180
NSKIAEFENF LRNPYKGSVT ANQSPFASPT PSIFPPTNQI NSSPPAFSGF NQQPAFPNTN  240
AGGLSSSGPL NAFASFSHQS NNQQTTFPNT NAGGVSSSGP SNAFASFNKQ PNAFSVNTPQ  300
PVPSGPSGFQ TQPSVAFKPA SFGPGPGLAT TPQNNNIFGR QTPTPAPNNS QNNAFNFNVP  360
VASFTAPSVD TTNTSSGTEL QIQGDPVDSS IWLKEKWNPG EIPEQAPPDA FV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g079950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0147440.0BT014744.1 Arabidopsis thaliana At1g75340.1 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428550.10.0PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2
SwissprotQ9FWS30.0C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLD7KSN00.0D7KSN0_ARALL; Zinc finger (CCCH-type) family protein
STRINGXP_010428549.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.10.0C3H family protein