PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g078840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 638aa    MW: 73024.3 Da    PI: 4.7501
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g078840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00054608627221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                     +C +Cg+ F ++  L++H+ 
  Csa09g078840.1 608 ECDKCGEEFESRTKLHKHLA 627
                     5*****************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1105.0E-23687IPR001623DnaJ domain
SuperFamilySSF465657.85E-237114IPR001623DnaJ domain
SMARTSM002716.8E-221174IPR001623DnaJ domain
CDDcd062571.19E-151271IPR001623DnaJ domain
PROSITE profilePS5007619.3081282IPR001623DnaJ domain
PfamPF002262.8E-201379IPR001623DnaJ domain
PRINTSPR006251.4E-141432IPR001623DnaJ domain
PRINTSPR006251.4E-143247IPR001623DnaJ domain
PRINTSPR006251.4E-145474IPR001623DnaJ domain
PROSITE patternPS0063605978IPR018253DnaJ domain, conserved site
SuperFamilySSF576675.06E-15305356No hitNo description
SMARTSM004511.4E-7311345IPR003604Zinc finger, U1-type
PfamPF121713.5E-10313339IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.82314338IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280316338IPR007087Zinc finger, C2H2
SMARTSM003551.6607631IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806607636IPR007087Zinc finger, C2H2
PROSITE patternPS000280609631IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MASSSSRSEK RCHYEVLGIS KESSPDEIRS SYRRLALQRH PDKLMKAGGL SEAEATAQFQ  60
ELVHAYEVLS DPKERAWYDS HRSQILFADH GSAGGSKSGG MPGGSVPDLF AFFSTTMYSG  120
YSDTGKGFYK VYYDVFNSVY LNEIKFARTL GLRMDSVKEA PIMGNLESPY AQVTAFYNYW  180
LGFCTVMDFC WVDQYDVVAG PNRKSRRLME EENKKLRKKA KREYNDTVRG LAEFVKKRDK  240
RVIDMMVKKN AEMEKKKEEE RERKKKMEKE RLERAMNYEE PEWAKAQEGE EEGAGFNVLG  300
EDDDDDAERK NEQLYCIVCS KKFKSEKQWK NHEQSKKHKE KVAELRESLT DYEEETEEEE  360
IDGPLDPPES VEQLHEKFQE GFNIDGEEKD VEEEVAGEAD ETDDEYFGAE EDMKGSSESE  420
DEDVDDEMSL LKKMVSGQKN KRKNAVSIEE DEVEVEIERD TAEFSEFDNQ KSTGKNKEAK  480
EERNKHDAGK EMADDTSKVQ IPEDDDDPDE NVNATDSASI AFEDAQKDDA DSMQYDNRKS  540
TGRRRRSKKG KDKNNNGGLT EKSSEADDTT PYVNRDMEAQ DYKKVPRSKK STRGMKTKGT  600
TKKNSNNECD KCGEEFESRT KLHKHLADSG HATVKSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bq0_A8e-121081268DNAJ
1xbl_A8e-121081268DNAJ
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213221KKLRKKAKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g078840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0205790.0AC020579.5 Arabidopsis thaliana chromosome 1 BAC F1O17 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428406.10.0PREDICTED: DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLR0HTW80.0R0HTW8_9BRAS; Uncharacterized protein
STRINGXP_010428406.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.10.0DNAJ heat shock N-terminal domain-containing protein