PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g078290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | EIL | ||||||||
Protein Properties | Length: 585aa MW: 65867.4 Da PI: 5.0596 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 435.4 | 5.1e-133 | 38 | 401 | 1 | 351 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 e+l++rmwkd+++lkr+ker+k + a ++ +k+++qa+rkkmsraQDgiLkYMlk mevc+++GfvYgiipekgkpv+g+sd++raWW Csa09g078290.1 38 EDLERRMWKDRVRLKRIKERQKVGS--QGA-QTKEMPKKISDQAQRKKMSRAQDGILKYMLKLMEVCKVRGFVYGIIPEKGKPVSGSSDNIRAWW 129 89*****************999754..444.5567789********************************************************* PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT- CS EIN3 96 kekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdq 190 kekv+fd+ngpaai+ky+ ++l++++++++ ++++ l++lqD+tlgSLLs+lmqhcdppqr+fplekg++pPWWPtG+e+ww +lgl+k+q Csa09g078290.1 130 KEKVKFDKNGPAAIAKYEEECLAFGKSDGN----KNSQFVLQDLQDATLGSLLSSLMQHCDPPQRKFPLEKGTPPPWWPTGDEEWWVKLGLPKSQ 220 ************************987777....78999******************************************************** PP -.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX......XXXX....XXXX CS EIN3 191 gtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss......slrk....qspk 273 + ppy+kphdlkk+wkv+vLtavi+hmsp+i++i++++rqsk+lqdkm+akes+++l+vlnqee+++++ s++ +s + +++k Csa09g078290.1 221 S-PPYRKPHDLKKMWKVGVLTAVINHMSPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEESLIQQPSSDngNSnvtethR--RgnnaDRRK 312 *.9**********************************************************************66226887540..334447788 PP XXXXXXXXXXXXXXXXXX.XXXXXXXXXX..................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXX CS EIN3 274 vtlsceqkedvegkkeskikhvqavktta..................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsis 350 ++++++++dv+g ++ + + ++++++++ +++ +r+rk+++ +s + + q+++ ++ e+++i++d+n+++ Csa09g078290.1 313 NVINSDSDYDVDGAEDASGSVSSKDSRRNqiqkeqataishsirdqdKAEKHRRRKRPRIRSGT-------VNPQEEEQPEAEQRNILPDMNHVD 400 8999999*****5555555555555555556666666687755544334444444433333333.......445566667789999****99987 PP X CS EIN3 351 q 351 Csa09g078290.1 401 A 401 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 2.7E-126 | 38 | 283 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 2.8E-71 | 159 | 291 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 1.57E-60 | 164 | 286 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042762 | Biological Process | regulation of sulfur metabolic process | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 585 aa Download sequence Send to blast |
MGDLAMTVAD IRMENEPDDL ASDNVAEIDV SDEEIDAEDL ERRMWKDRVR LKRIKERQKV 60 GSQGAQTKEM PKKISDQAQR KKMSRAQDGI LKYMLKLMEV CKVRGFVYGI IPEKGKPVSG 120 SSDNIRAWWK EKVKFDKNGP AAIAKYEEEC LAFGKSDGNK NSQFVLQDLQ DATLGSLLSS 180 LMQHCDPPQR KFPLEKGTPP PWWPTGDEEW WVKLGLPKSQ SPPYRKPHDL KKMWKVGVLT 240 AVINHMSPDI AKIKRHVRQS KCLQDKMTAK ESAIWLAVLN QEESLIQQPS SDNGNSNVTE 300 THRRGNNADR RKNVINSDSD YDVDGAEDAS GSVSSKDSRR NQIQKEQATA ISHSIRDQDK 360 AEKHRRRKRP RIRSGTVNPQ EEEQPEAEQR NILPDMNHVD APLLEYNING THHEEGVVDP 420 NIALGPEENG LELVLPEFNN SYTYLPPVSG QAMMPVDERP MLYGSNPNQE LQFGSGYNFY 480 NPSAVFVNNQ EDDILHTQIE MNTQAPTHTS GFETQGGLLQ PHGLHGNEDG VSGSELPPQY 540 QTDQDKLLDS SILSPFNDLA FDSTTLYSGF DSYAFDDDFS WFGA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wij_A | 3e-85 | 163 | 294 | 9 | 140 | ETHYLENE-INSENSITIVE3-like 3 protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00233 | DAP | Transfer from AT1G73730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g078290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF004215 | 0.0 | AF004215.1 Arabidopsis thaliana ethylene-insensitive3-like3 (EIL3) mRNA, complete cds. | |||
GenBank | AY070044 | 0.0 | AY070044.1 Arabidopsis thaliana putative ethylene-insensitive protein EIL3 (At1g73730) mRNA, complete cds. | |||
GenBank | AY133839 | 0.0 | AY133839.1 Arabidopsis thaliana clone U18784 putative ethylene-insensitive protein EIL3 (At1g73730) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010428309.1 | 0.0 | PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein | ||||
Swissprot | O23116 | 0.0 | EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein | ||||
TrEMBL | R0IA25 | 0.0 | R0IA25_9BRAS; Uncharacterized protein | ||||
STRING | XP_010428309.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4658 | 25 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73730.1 | 0.0 | ETHYLENE-INSENSITIVE3-like 3 |
Publications ? help Back to Top | |||
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