PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g077150.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 425aa    MW: 48066.9 Da    PI: 6.5552
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g077150.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.31.6e-12233289155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Csa09g077150.1 233 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDEEEKAARAYDLAALKYWG 289
                     78*******************77776664446655.779999**************98 PP
2AP248.42.2e-15332383155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Csa09g077150.1 332 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 383
                     78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-15233299IPR016177DNA-binding domain
CDDcd000181.48E-18233296No hitNo description
PfamPF008472.3E-9233289IPR001471AP2/ERF domain
PROSITE profilePS5103217.082234297IPR001471AP2/ERF domain
SMARTSM003801.5E-22234303IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-12234298IPR001471AP2/ERF domain
PRINTSPR003672.9E-6235246IPR001471AP2/ERF domain
CDDcd000181.66E-24332393No hitNo description
PfamPF008473.3E-10332383IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18332392IPR016177DNA-binding domain
PROSITE profilePS5103219.072333391IPR001471AP2/ERF domain
SMARTSM003801.2E-32333397IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-18333391IPR001471AP2/ERF domain
PRINTSPR003672.9E-6373393IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MNKWLGFSLT PHLRTCDREE EKDEEELRHN GSDGSLFFAD PLTHHPSVGR YDINLDHHHH  60
HDEEVPNSHQ TEYPMNHNQT NINCTTVINE LYPPGYLLHE QTEVTPQYPN LVLDYGAFER  120
VGSVSDLKSW LRQDTPTFPL SNTYVTEEGG TSNTISQLSN EETGYYNTSG SMLSLALSHG  180
ACSDLINESN VLSVPVEEPV KVDEKRKRLD GKSQVVKETV PRKSVNSLGQ RTSQYRGVTR  240
HRWTGRYEAH LWDNSCKKEG QTRKGRQGGY DEEEKAARAY DLAALKYWGP TTHLNFSLSN  300
YEKEIEELDN MNRQEFVAML RRNSSGFSRG ASVYRGVTRH HQHGRWQARI GRVAGNKDLY  360
LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DINRYDVKRI CSASSAIANT DQAKGSPSGQ  420
ERPP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g077150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464220.0DQ446422.1 Arabidopsis thaliana clone pENTR221-At1g72570 ovule development protein (At1g72570) mRNA, complete cds.
GenBankDQ6529300.0DQ652930.1 Arabidopsis thaliana clone 0000013270_0000009577 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428147.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE10.0AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLD7KR170.0D7KR17_ARALL; Uncharacterized protein
STRINGXP_010428147.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.10.0AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]