PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g075370.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 384aa MW: 40221.5 Da PI: 8.9859

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g075370.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.8	2.2e-39	58	167	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas....nsssg... 88 +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ ++s + +s + + Csa09g075370.1 58 PAAKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNASLRGGGStlfaQ---Psks 149 5789************************************************************999998874333333333322221...0212 PP TCP 89 .................k 89 + Csa09g075370.1 150 assplssfhttgmslyeD 167 334444433333444331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-35	64	184	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.031	64	118	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MELHTNQNSG VSDSTLQLNS GDKQHSIPFV GAMSTTTSSS TSNSTSTSSG TALAVVKPAA 60 KKPSKDRHTK VDGRGRRIRM PAMCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAIIASTG 120 TGTIPANFST LNASLRGGGS TLFAQPSKSA SSPLSSFHTT GMSLYEDTSN GTNGSSSSVD 180 PSRKLLNSAA AAQNAAAVFG FHHQMYPPIM STERAPSNLV KSYREDYFKE PGAEPSGSSQ 240 KQGQFQDQEL GQGGRTAATA NVVPQPMWAV APGTTNGGSA FWMLPMSGSG GREQMQQQQG 300 HQMWAFNPGN YPVGSGRVVT APMGSMMLGG QQLGLGVAES NMAAAMRGGS RGDGLAMTLD 360 QHQHQHQEPN QSQASENGGD DKK*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MELHTNQNSG VSDSTLQLNS GDKQHSIPFV GAMSTTTSSS TSNSTSTSSG TALAVVKPAA  60
KKPSKDRHTK VDGRGRRIRM PAMCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAIIASTG  120
TGTIPANFST LNASLRGGGS TLFAQPSKSA SSPLSSFHTT GMSLYEDTSN GTNGSSSSVD  180
PSRKLLNSAA AAQNAAAVFG FHHQMYPPIM STERAPSNLV KSYREDYFKE PGAEPSGSSQ  240
KQGQFQDQEL GQGGRTAATA NVVPQPMWAV APGTTNGGSA FWMLPMSGSG GREQMQQQQG  300
HQMWAFNPGN YPVGSGRVVT APMGSMMLGG QQLGLGVAES NMAAAMRGGS RGDGLAMTLD  360
QHQHQHQEPN QSQASENGGD DKK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g075370.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010428054.1	0.0	PREDICTED: transcription factor TCP22-like
Swissprot	Q9C7G4	0.0	TCP22_ARATH; Transcription factor TCP22
TrEMBL	R0I9T3	0.0	R0I9T3_9BRAS; Uncharacterized protein
STRING	XP_010428054.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7053	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	1e-146	TCP family protein

Publications ? help Back to Top
Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Dong H, et al. Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis. Genes Dev., 2017. 31(2): p. 197-208 [PMID:28167503]