PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g068830.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 318aa    MW: 36054.2 Da    PI: 4.9992
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g068830.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.92.1e-32511822128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkya....tgkrknratksgyWkatgkdk 90 
                     ppG++F P+de+l+ +yLk+  +g+  +l  v i++v+iy+++P+ L +k+++ +ekew+f s+r k  +     g++k+r  + gyW+at   k
  Csa09g068830.1  51 PPGYKFVPKDEQLIFHYLKPFSQGDIYSLLGVpIHQVNIYESDPQLLTEKYEKgNEKEWFFISERTKLGKgggrGGRQKKRGSNGGYWSATVAAK 145
                     9*************************9999999**************96555526679998888888777444234466667889********** PP

             NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ + ++  vg k++L +y g++p+g+k dW+m+ey l
  Csa09g068830.1 146 KINA-GNGIVGYKTILDYYVGKQPNGVKGDWLMQEYWL 182
                     ***9.9999***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-4146207IPR003441NAC domain
PROSITE profilePS5100539.27550207IPR003441NAC domain
PfamPF023651.9E-1651181IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAIPPRNKRK ASSSPERQTQ PPEPPYNPDV PSSSAADDFF PPPTTQPFVF PPGYKFVPKD  60
EQLIFHYLKP FSQGDIYSLL GVPIHQVNIY ESDPQLLTEK YEKGNEKEWF FISERTKLGK  120
GGGRGGRQKK RGSNGGYWSA TVAAKKINAG NGIVGYKTIL DYYVGKQPNG VKGDWLMQEY  180
WLESSSSDDD HNNENKVDHA LCKIYLTPRG AKKKKKSEEE EIVQLDLNQP QPQDIVYQRQ  240
QYCELPAQDQ NPLPQKLPFP CNLDGFSEFI SFEQQPVIAD DFEGFWTDFI KSSYTLLDGD  300
EEYNNIGLFF NASSQKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-224321314174NAC domain-containing protein 19
3swm_B3e-224321314174NAC domain-containing protein 19
3swm_C3e-224321314174NAC domain-containing protein 19
3swm_D3e-224321314174NAC domain-containing protein 19
3swp_A3e-224321314174NAC domain-containing protein 19
3swp_B3e-224321314174NAC domain-containing protein 19
3swp_C3e-224321314174NAC domain-containing protein 19
3swp_D3e-224321314174NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g068830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431409.10.0PREDICTED: NAC transcription factor 29-like
TrEMBLA0A384KMI21e-122A0A384KMI2_ARATH; NAC064
TrEMBLQ9LXY71e-122Q9LXY7_ARATH; NAC domain containing protein 64
STRINGXP_010427482.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.11e-101NAC domain containing protein 64