PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g067790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 417aa    MW: 45598 Da    PI: 5.0951
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g067790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.7e-185095147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+teEd  l ++v +lG ++W++Iar ++ gR++k+c++rw + 
   Csa09g067790.1 50 KGPWSTEEDAVLTKLVIKLGARNWSLIARGIP-GRSGKSCRLRWCNQ 95
                     79******************************.***********985 PP
2Myb_DNA-binding49.11.3e-15102146147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r++++ eEd  ++ a++ +G++ W+ Ia+++  gRt++ +k++w++ 
   Csa09g067790.1 102 RKPFSDEEDRMIISAHAIHGNK-WAVIAKMLT-GRTDNAIKNHWNST 146
                      789*******************.********9.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.1245100IPR017930Myb domain
SuperFamilySSF466891.52E-2947143IPR009057Homeodomain-like
SMARTSM007171.9E-144998IPR001005SANT/Myb domain
PfamPF002494.7E-165095IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2551103IPR009057Homeodomain-like
CDDcd001671.24E-135294No hitNo description
SMARTSM007176.6E-16101149IPR001005SANT/Myb domain
PROSITE profilePS5129420.456101151IPR017930Myb domain
PfamPF002493.9E-14102146IPR001005SANT/Myb domain
CDDcd001678.02E-12104147No hitNo description
Gene3DG3DSA:1.10.10.603.0E-23104150IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDRSEPLPLP FTDSDEGISE AIEAELAELA AGDSSGGYGG GGGRVKSKVK GPWSTEEDAV  60
LTKLVIKLGA RNWSLIARGI PGRSGKSCRL RWCNQLDPSL KRKPFSDEED RMIISAHAIH  120
GNKWAVIAKM LTGRTDNAIK NHWNSTLRRK YADLWNNGQW IANSVTTAYV KNENLDEVSN  180
PSSKQQLPQE DINSPPKPPQ VSDVIMEDAA NEPHQEQAAP PVESDVQAPP VASDVQAPPV  240
ESNVKAPLVE SNVPIESSNV FRPVARVGAF SVYNPTSQRN GYRDQNIVPC EGLLIQAAKP  300
DSLAGKFLQS LYDEPHVPSK CGRGCSTTNP AETKYSRNSV LGPEFVDYEE PCAVFNQELI  360
SIATDLNNIA WIKSGLDNAV VREAEQSLKI DNCNYNDPRI KFTGMVPRQD FFCARS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-37491506107B-MYB
1mse_C4e-37491503104C-Myb DNA-Binding Domain
1msf_C4e-37491503104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g067790.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2627340.0AF262734.2 Arabidopsis thaliana putative transcription factor MYB109 (MYB109) mRNA, complete cds.
GenBankAY1363250.0AY136325.1 Arabidopsis thaliana MYB transcription factor-like protein (At3g55730) mRNA, complete cds.
GenBankAY5196000.0AY519600.1 Arabidopsis thaliana MYB transcription factor (At3g55730) mRNA, complete cds.
GenBankBT0000920.0BT000092.1 Arabidopsis thaliana MYB transcription factor-like protein (At3g55730) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427363.10.0PREDICTED: myb-related protein B-like
SwissprotO041921e-108MYB25_ARATH; Transcription factor MYB25
TrEMBLR0HGB70.0R0HGB7_9BRAS; Uncharacterized protein
STRINGXP_010427363.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.10.0myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]