 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa09g065810.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
AP2 |
| Protein Properties |
Length: 342aa MW: 38115.7 Da PI: 9.446 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa09g065810.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 56.1 | 9.2e-18 | 114 | 163 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g
Csa09g065810.1 114 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAAIKFRG 163
78*******************......55************************998 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009658 | Biological Process | chloroplast organization |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MLDLNLKIFS SYDADQDRKV PFMNSTTGEE ESNSSSTTDS AAGDAFITFG ILKRDDDVTP 60
PPPKETGDLF PVADARRSIE FSVEDSHWLN LSSLQRNTQK VLKKSRRGPR SRSSQYRGVT 120
FYRRTGRWES HIWDCGKQVY LGGFDTAYAA ARAYDRAAIK FRGLDADINF VVDDYRHDID 180
KMKNLNKVEF VQTLRRESAS FGRGSSKYKG LALQKCTQFK THDQIHLFQN RGWDAAAIKY 240
NELGKGDGAM KFGAHIKGNA HNDLELSLGI SSSSENMKLT TGDYYKGINW STMGLFGKQS 300
SIYLPMTTAT MKPLKTVAAS SGFPYISMTT SSSSMSTCFD P*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY576275 | 0.0 | AY576275.1 Arabidopsis thaliana AP2 domain transcription factor (SMZ) mRNA, complete cds. |
