 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa09g064100.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
Trihelix |
| Protein Properties |
Length: 299aa MW: 33469.1 Da PI: 10.1512 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa09g064100.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 53.3 | 7.4e-17 | 38 | 122 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ v L+ea+++++ +r+klk+++We+v++++ +++ ++++qCk+k+e+++kry+ + +++ ++ s++p++ +l+
Csa09g064100.1 38 EWSEGAVSSLLEAYESKWVLRNRAKLKGQDWEDVARHVssraTHTKSPKTQTQCKNKIESMKKRYRSESATAPDG-----SSWPLYPRLD 122
5*************************************77666666678899********************996.....57*****998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MENGESNQET PKSLLHHEES PKKPSVSSVV VDRLKRDEWS EGAVSSLLEA YESKWVLRNR 60
AKLKGQDWED VARHVSSRAT HTKSPKTQTQ CKNKIESMKK RYRSESATAP DGSSWPLYPR 120
LDHLLRGTQP QPQPQAVLPL NCSVPLLLLE PPSPAVAHPP QVSYGSNGVG KIPKEDGFKP 180
EDKPGKATEM DTDSSTPVVK TKVRGKKVRR RYKEEKEEIA GSIRWLAEVV MRSERARMET 240
MKEIEKMRAE AEAKRAEMDL KRTEIMANTQ LEIARLFAVA ASSGHNKGVD SSLRIGRN*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY084391 | 0.0 | AY084391.1 Arabidopsis thaliana clone 106702 mRNA, complete sequence. |
| GenBank | AY140041 | 0.0 | AY140041.1 Arabidopsis thaliana putative protein (At3g54390) mRNA, complete cds. |
| GenBank | BT006322 | 0.0 | BT006322.1 Arabidopsis thaliana At3g54390 mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G54390.1 | 1e-140 | sequence-specific DNA binding transcription factors |
