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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g062020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 178aa MW: 20229.3 Da PI: 10.1164 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C++ F + L H+r+H Csa09g062020.1 94 HKCSICDQIFGTGQALGGHMRKH 116 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.4E-10 | 49 | 74 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.87E-6 | 49 | 116 | No hit | No description |
SMART | SM00355 | 0.43 | 50 | 72 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.972 | 50 | 77 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.015 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.016 | 94 | 121 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.6E-10 | 94 | 118 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MKRDRSDYEE SVKHIDIVKS LMMLSQSFVV KQIDVKQSTA GSKTNHNNHF ECKTCNRKFD 60 SFQALGGHRA SHKKPKLSVD QEQVKHRNNE NDMHKCSICD QIFGTGQALG GHMRKHRASM 120 MTEQSVIPSP LVYSRPVLNR CSSSKKILDL NLTPLENDLV FIFGKNLVPQ IDLKLRH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g062020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493648 | 0.0 | AB493648.1 Arabidopsis thaliana At3g53600 mRNA for hypothetical protein, partial cds, clone: RAAt3g53600. | |||
GenBank | AL132966 | 0.0 | AL132966.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12. | |||
GenBank | BT030044 | 0.0 | BT030044.1 Arabidopsis thaliana At3g53600 mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010431330.1 | 1e-127 | PREDICTED: zinc finger protein ZAT11-like | ||||
Swissprot | Q9SLD4 | 3e-77 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A178VMG3 | 1e-112 | A0A178VMG3_ARATH; Uncharacterized protein | ||||
TrEMBL | D7LUK3 | 1e-112 | D7LUK3_ARALL; Zinc finger family protein | ||||
STRING | XP_010431330.1 | 1e-127 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 1e-117 | C2H2 family protein |