PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g061710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 203aa    MW: 22481.5 Da    PI: 4.2073
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g061710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.9e-151898187
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                    ffkv+    +++s+ +v+p ++ ++   +   +k+++l+ + g sW+v    + +++++ +++ W +Fv++n L++gDf++F ++g+
  Csa09g061710.1 18 FFKVF--VAHFSSDSMVIPVSYYDQL--PRLLPKKVILQGPGGCSWDVAT--KIRGDEVHFAQRWPKFVDDNTLNDGDFLTFVYNGD 98
                    78888..77899999*******9766..4558899***************..88888999999*******************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-1715100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.02516109IPR003340B3 DNA binding domain
SuperFamilySSF1019361.33E-1816100IPR015300DNA-binding pseudobarrel domain
CDDcd100174.84E-151698No hitNo description
PfamPF023621.0E-121898IPR003340B3 DNA binding domain
SMARTSM010191.5E-1118104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSSSSMAAAT DFQFPPRFFK VFVAHFSSDS MVIPVSYYDQ LPRLLPKKVI LQGPGGCSWD  60
VATKIRGDEV HFAQRWPKFV DDNTLNDGDF LTFVYNGDHI LSDDTDSPSK PEMTNAIPEG  120
RDKESDSGSE IKIGKTTRKR KNKEKKKDQE AVPVEEESSE EDGDGDSVSD YIEAFGQLDV  180
EDKSNSEDSS YAPEEEDTAT ST*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RKNKEKKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g061710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432421.13e-94PREDICTED: B3 domain-containing protein At4g34400-like
SwissprotQ9SZ055e-62Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLA0A178V1J91e-59A0A178V1J9_ARATH; Uncharacterized protein
STRINGXP_010432421.11e-93(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-61B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]