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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g059310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 1979aa MW: 218082 Da PI: 7.1699 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.7 | 2e-11 | 807 | 848 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++++ + +G++ +k+Ia+++ +t +c+++++k Csa09g059310.1 807 PWTSEEKEIFLKMLASHGKD-FKKIASYLS-QKTTADCVDYYYK 848 8*****************99.*********.9**********98 PP | |||||||
2 | Myb_DNA-binding | 35.7 | 2e-11 | 1207 | 1248 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++++ + +G++ +k+Ia+++ +t +c+++++k Csa09g059310.1 1207 PWTSEEKEIFLKMLASHGKD-FKKIASYLS-QKTTADCVDYYYK 1248 8*****************99.*********.9**********98 PP | |||||||
3 | Myb_DNA-binding | 26.8 | 1.2e-08 | 1422 | 1463 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT +E +++++ ++G++ +++I+r++g R++ qc+ ++ k+ Csa09g059310.1 1422 WTDDERSAFIQGFSLFGKN-FASISRYVG-SRSPDQCRVFFSKV 1463 *****************99.*********.********998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.79E-14 | 790 | 851 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-7 | 799 | 850 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.096 | 803 | 854 | IPR017884 | SANT domain |
SMART | SM00717 | 5.2E-10 | 804 | 852 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.62E-8 | 807 | 849 | No hit | No description |
Pfam | PF00249 | 8.5E-9 | 807 | 848 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.79E-14 | 1190 | 1251 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-7 | 1199 | 1250 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.096 | 1203 | 1254 | IPR017884 | SANT domain |
SMART | SM00717 | 5.2E-10 | 1204 | 1252 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-9 | 1207 | 1248 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.62E-8 | 1207 | 1249 | No hit | No description |
PROSITE profile | PS51293 | 12.5 | 1417 | 1468 | IPR017884 | SANT domain |
SMART | SM00717 | 6.0E-8 | 1418 | 1466 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-4 | 1421 | 1462 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.96E-9 | 1421 | 1468 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.10E-6 | 1422 | 1463 | No hit | No description |
Pfam | PF00249 | 4.9E-7 | 1422 | 1462 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1979 aa Download sequence Send to blast |
MPQDHASWDR KELLRQRKHD RPEPSSFDSP FRWRDSPSST PSSHHVPREF SRWGSGGDFR 60 RPSSSSSSCH GKQGGRHQFA EESSHGYTSS RSSARIFDND YYRPSASRGD WRYTRNCRDD 120 RVSVSQKEWK CNTWEMSNGS SRSFERPFGI RNGRRSVDER PLHASDTHTT AVNSFDPTNS 180 AHQPDTEVYT PVRSLKFKSE QKFSDQRLSL PSDPHSDCVS LFERPSSENN YGSKVSSPAK 240 QCNDLMYGRR IANDNSLDPP ILNAELEGTW EQPHMKDPQE DNRLHGDATA CATTTHLSEE 300 MSSRKKQRLG WGEGLAKYEK KRVDVNTNED GTTLLENGSE ELHSLNKSIA DKSPTAATVP 360 DYGSPTTPSS VACSSSPGFA DKSSAKAAIA GCDVSDMCRS PSPVSSFHLE QFPINIEELD 420 NILMERFGCL LNELLCTDDP GTGDSSSVQL TSMNRLLSWK SEILKAVEMT ESEIDLLENK 480 HRALKLEGER HCHVVGPSSH FCEGDANVPK EKEASCILGP KVAAPCVAET LVRSPVHQSG 540 LAKVPVDVFE DNPGEVKSLS QSFATVESNE DLLPMTSMKA AASSKEINTP AFVSQETIEL 600 SAAADSMASN EDLLCATLYS SNKKYACESS GVFNELLPRN FCSFDDSRFP SICHTQFDSH 660 VKEKIADRVE LLRAREKILL LQFKAFQLSW KKDLHQLAST KYQSKSSKKT ELYPNAKNGG 720 YLKLPQPVRL RFSSSAPRRD SVVPTTELVS YMEKLLPGTH LKPIRDILRM PAMILDEKER 780 VMSRFISSNG LVEDPCDVEK ERTMINPWTS EEKEIFLKML ASHGKDFKKI ASYLSQKTTA 840 DCVDYYYKNH KSDCFGKIKK QRAYGKEGKH TYMLAPRKKW KREMGSASLE ILGAVSVVAA 900 NAGKGDANVP KEKEASCILG PKVAAPSVAE SLVRSPVHQS GLAKVPDVFE DNPGEVKSLS 960 QSFATVESNE DLLPMPSMKA AGSSKEINTP AFVNPETIEL SAADDSMASN VDLLCATLYS 1020 SNKKYACESS GVFNELLPRN FCSFDDSRFP SICHTQFDSH VKEKIADRVE LLRAREKILL 1080 LQFKAFQLSW KKDLHQLAST KYQSKSSKKT ELYPNAKNGG YLKLPQPVRL RFSSSAPRRD 1140 SVVPTTELVS YMEKLLPGTH LKPIRDILRM PAMILDEKER VISRFISSNG LVEDPCDVEK 1200 ERTMINPWTS EEKEIFLKML ASHGKDFKKI ASYLSQKTTA DCVDYYYKNH KSDCFGKIKK 1260 QRAYGKEGKH TYMLAPRKKW KREMGSASLE ILGAVSVVAA NAGKVAPTRP ITSKRITLRG 1320 CSSSNSLQHD GNNSEGCSYS FDFPRKRTVG ADVLAVGPLS SEQINSCLRT SVSSRERCMD 1380 HLKFNPVVKK PRISHTLHNE NSNEEDDSCS EESCGETGPI HWTDDERSAF IQGFSLFGKN 1440 FASISRYVGS RSPDQCRVFF SKVRKCLGLE FIQSGSGNVS TSVSVDNGNE GGGSDLEDPC 1500 PIESNSGICT KMDMNSPTSP FNMNQDGANH SGSANVKADL SRSEQENGLT YMQDGSNPVN 1560 NAYINGGLPG LISESCRDLV DINTVESQSQ AAGKSKSNDL LSMEIDEGVL TSVAVYSEPL 1620 YCGLSVLSNV IVETPAESSG DQGSAIPKLS SKNQDGVMQA ANRTRNSGLE PESAPSGFKY 1680 PECLHHVPIE VCTENPIGVS VPRGNPNCHT EGKSGHSLVG QAVETHDLGW QSSKDNLEFD 1740 RQLQVIGHVN PEQNGHLNAN YAESCQIPQR SVIQDPSRIS RSKSDLIVKA QRTCEGFSLI 1800 KCTSSAPNPL AVSHKEGRSG HSRSHSFSLS DTERLDKNGD VKLFGTVLTA DENGIKQKHN 1860 PCGSVRSSST LSRDHDTRHH CINQQHLQNV PITSYGFWDG NRIQTGLTSL PESAKLLASC 1920 PEAFSSHLKQ QVGKEIRLDV NGGGILSFGK LNEDRAEASS AKDGGNIGGV NGVAEAAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 1e-16 | 764 | 1255 | 3 | 93 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 1e-16 | 764 | 1255 | 3 | 93 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g059310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF546983 | 0.0 | HF546983.1 Arabis alpina myb gene for myb like transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010431268.1 | 0.0 | PREDICTED: uncharacterized protein LOC109124604 | ||||
TrEMBL | D7LU40 | 0.0 | D7LU40_ARALL; Myb family transcription factor | ||||
STRING | XP_010431268.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5260 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 0.0 | MYB family protein |