PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g058950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HSF | ||||||||
Protein Properties | Length: 277aa MW: 32037.3 Da PI: 6.3212 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 106.9 | 1.6e-33 | 28 | 118 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++e+++d+++++++sw++ g+sfvv+d +f++ +Lp++Fkh nf+SF+RQLn+YgF+k++ e+ weF+++ F g+++ll++ Csa09g058950.1 28 FLTKTFEMVDDPNTDQIVSWNRGGTSFVVWDLYSFSTILLPRHFKHCNFSSFIRQLNTYGFRKIEAER---------WEFANEGFLVGQRHLLKN 113 9****************************************************************999.........****************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 ikr++ Csa09g058950.1 114 IKRRT 118 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 3.26E-33 | 24 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.6E-56 | 24 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 9.3E-36 | 24 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 6.4E-19 | 28 | 51 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.0E-29 | 28 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.4E-19 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 67 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.4E-19 | 79 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MNPFVPEGFD RQPPQPMEGL HEVGPPPFLT KTFEMVDDPN TDQIVSWNRG GTSFVVWDLY 60 SFSTILLPRH FKHCNFSSFI RQLNTYGFRK IEAERWEFAN EGFLVGQRHL LKNIKRRTTF 120 TTSSSSSSTT PSSHDAACNE LRREKQVLMM ELMSLRQQQQ TTKSYVKAME QRIEGAEMKQ 180 RQMMSFLARA MQSPSFLHQL LKQRDKRIME IDDETAKRKR GSSSVSELEA LALEMQGYGK 240 QRIMLEEDDH HLVVERELDD GFWDELLSDE SLASTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 7e-24 | 26 | 119 | 18 | 122 | Heat shock factor protein 1 |
5d5u_B | 7e-24 | 19 | 119 | 17 | 131 | Heat shock factor protein 1 |
5d5v_B | 7e-24 | 19 | 119 | 17 | 131 | Heat shock factor protein 1 |
5d5v_D | 7e-24 | 19 | 119 | 17 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 116 | LKNIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g058950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010426772.1 | 0.0 | PREDICTED: heat stress transcription factor A-7a-like | ||||
Swissprot | Q9SV12 | 1e-164 | HFA7A_ARATH; Heat stress transcription factor A-7a | ||||
TrEMBL | D7LTZ9 | 1e-164 | D7LTZ9_ARALL; AT-HSFA7A | ||||
STRING | XP_010426772.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1256 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51910.1 | 1e-151 | heat shock transcription factor A7A |
Publications ? help Back to Top | |||
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