PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g058090.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 1283aa    MW: 141037 Da    PI: 6.9726
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g058090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.5e-0612611282426
                      ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                      ++C+ f+++G Ck G++C+F H+
  Csa09g058090.1 1261 KICK-FYESGNCKKGASCSFWHP 1282
                      6899.8999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.88E-7107164IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.9E-7108167IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.591112178IPR019787Zinc finger, PHD-finger
CDDcd155683.28E-19114159No hitNo description
SMARTSM002499.1E-7114160IPR001965Zinc finger, PHD-type
PROSITE patternPS013590115175IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.102.0E-23318405IPR003121SWIB/MDM2 domain
SuperFamilySSF475921.42E-20318396IPR003121SWIB/MDM2 domain
PfamPF022019.2E-13328396IPR003121SWIB/MDM2 domain
SMARTSM007191.6E-45445555IPR004343Plus-3 domain
PROSITE profilePS5136019.281445578IPR004343Plus-3 domain
SuperFamilySSF1590426.15E-26446574IPR004343Plus-3 domain
PfamPF031261.1E-17450553IPR004343Plus-3 domain
SuperFamilySSF552772.88E-16718774IPR003169GYF domain
PROSITE profilePS5082915.702721775IPR003169GYF domain
CDDcd000725.71E-20721778No hitNo description
SMARTSM004449.7E-16722777IPR003169GYF domain
PfamPF022138.2E-12723767IPR003169GYF domain
Gene3DG3DSA:3.30.1490.404.4E-17723775IPR003169GYF domain
SuperFamilySSF902297.72E-612571281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.15512571282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-412611281IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1283 aa     Download sequence    Send to blast
MANQQKQLRR GVPELASLAG REESSVRGID LMRVDQCDEI GSANQVSTLS VSASTVSRTV  60
AVPVSIEQEV KVIDEAAPVK RKRGRPPRSQ ANTQLHNRPP PPPPLRKDDK EEDVCFICFD  120
GGDLVLCDRR NCPKAYHPAC IKRDEAFFRT TAKWNCGWHI CGTCQKASSY MCYTCTFSVC  180
KRCIKDADYV IVRGNMGLCG TCIKPVMLIE NIAQGDNEAV KVDFDDKLSW EYLFKIYWLC  240
LKEDLSLTVD ELTRANNPWK EVSNTAPKVE SRNDPTNNRV LDVAVNGTKR RRTSDSPTLP  300
SKVDGKKPNN ILKKAPGDTC WATRELLEFV SFMKNGDTSV LSQFDVQGLV LDYIKQKDLR  360
DPLQKSQVVC DPMLGKLFGK PRVGHFEMLK LLESHVLIQE KQKDDKTTNG ESTHTVPSQI  420
EDRRRKMRRK TDGRVQNENL DAHAAIDVHN INLIYLRRKY LESLLDDINK VHEKVVGTIL  480
RIKVSGSDQK LDIHRLVQVV GTSKATTSYQ LGPKTTDVML EILNLDKREV ISIDQLSDQN  540
VTEDECKRLR QSIKNGLNKR LTVGDILKTA ATLQAMRINE SLEAETLKLN HLRDRASEKG  600
HRKELRECVE KLELLKSPEE RQRRLQEVPE VHTDPSMDPS HASSEDVGLG TRNQDNHITA  660
QSKGPLKKGA ILNNMGNNAQ KKYDAPILRS RNAVHSEKDD CSKVHNNSSN IQETGKDDEE  720
SEIWHYRDPT GKTQGPFSMV QLRRWKSSGH FPPYLRIWKA HENQDESVLL TDALAGRFDK  780
ASTLPSSSSL PQEPKPSPHD SGMDVNCLQK NHTPVNTSAT SSPYTVSAHF DDPKEKQVVA  840
LVACSGEDGN SVCPQPQVSC PASMSVVPGH VVTPDVRKTP GSDLSNVVRA DGNHSTTNTV  900
EDGSNGGSVS INGSVHAPNL NQESHFPDFP SPTPKSSPED LEAQAAETIQ SLSSCVLVKG  960
PSGVTWSTTT TSTTDSATTT SSVVVTGGQL PQVTQQNAIV LAAPSVKPID LVADHATTTQ  1020
TSDNTQVAQS SGWPAIVADP DECDESVSDL LAEVEAMEQN GLPSSPTSTF HCDDDDDLTK  1080
GPEKDFFNPV ARMSLAPETC RMDVSQASIL ENVSAGKSSM GTEEKVNTPF SHCGTAGPEL  1140
LLFAPPAPAP ASITHDLTLT TTALRLGSET TVEAGPVVER LLKSGSEPSP RALSYHDSAR  1200
GNTERSPRGS QQKRSSGHSR DRQWLNNGHN SHNNRQWPYS NSHGYAHGSG SYAAHPPKGL  1260
KICKFYESGN CKKGASCSFW HP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2naa_A3e-13110182473Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific
4gnd_A3e-131121811581Histone-lysine N-methyltransferase NSD3
4gnd_C3e-131121811581Histone-lysine N-methyltransferase NSD3
4gne_A3e-131121811581Histone-lysine N-methyltransferase NSD3
4gnf_A3e-131121811581Histone-lysine N-methyltransferase NSD3
4gng_A3e-131121811581Histone-lysine N-methyltransferase NSD3
4gng_D3e-131121811581Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g058090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426653.10.0PREDICTED: zinc finger CCCH domain-containing protein 44
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLR0HHW80.0R0HHW8_9BRAS; Uncharacterized protein
STRINGXP_010426653.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding