PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g053460.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 192aa    MW: 21689.5 Da    PI: 6.501
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g053460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.73.3e-37101091100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC+kdCv+apyfp ++++++++vhk+FGas+v +l++++p+++r+ ams+l++eA+ r +dP++G+ +++  lq ql+ l++++a
  Csa09g053460.1  10 PCAACKHLRRKCTKDCVFAPYFPTNKQESYEMVHKVFGASHVASLINEIPPNHRDFAMSTLAWEAQLRDNDPIHGVNSILDPLQYQLKDLQNQIA 104
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                      +k+e
  Csa09g053460.1 105 IAKNE 109
                     99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.8879110IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-3510107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDKDNTITPP CAACKHLRRK CTKDCVFAPY FPTNKQESYE MVHKVFGASH VASLINEIPP  60
NHRDFAMSTL AWEAQLRDND PIHGVNSILD PLQYQLKDLQ NQIAIAKNEL SSSFGMVPTT  120
FVPPPPITYQ QRIHPNPMIP DTTNNDGCLT AQQLQDEAQR FASTQTAQFQ QTQESQTQYN  180
ENVMIVRDKK I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-331012111126LOB family transfactor Ramosa2.1
5ly0_B8e-331012111126LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g053460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426594.21e-142PREDICTED: LOB domain-containing protein 28-like, partial
SwissprotQ9SCS43e-70LBD28_ARATH; LOB domain-containing protein 28
TrEMBLR0FSZ01e-86R0FSZ0_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010426594.11e-142(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50510.17e-55LOB domain-containing protein 28