PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 222aa MW: 23825 Da PI: 7.342

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g052710.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	3.9e-05	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ CgksF++ L H +H Csa09g052710.1 96 YKCSVCGKSFPSYQALGGHKTSH 118 9***********99998888777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.68E-9	94	118	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.1E-4	94	118	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.3E-14	96	120	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0022	96	118	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.783	96	123	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	98	118	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.68E-9	152	179	No hit	No description
Pfam	PF13912	2.9E-12	156	181	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.2	157	179	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.871	157	179	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	159	179	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MALDTLNSPT STTTTNAPPP PPFLRCLDQT EPENLESWTK RKRTKRHRTD QSNPPSEEEY 60 LALCLLMLAR GSSDHHSLPS DHHSPSSPPS DHQKDYKCSV CGKSFPSYQA LGGHKTSHRK 120 PVSNNNNDDG NNNTNGSVTN NANITSNGLV GQSGKTHNCS ICFKSFPSGQ ALGGHKRCHY 180 DGGGGSNSNM PSHGFDLNLP ADQVSDGKSQ LSDDEVTKSV L*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269\|PubMed:15333755, ECO:0000269\|PubMed:21852415}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00399	DAP	Transfer from AT3G49930	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g052710.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269\|PubMed:10806347, ECO:0000269\|PubMed:15333755, ECO:0000269\|PubMed:21852415}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL132978	1e-120	AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4.
GenBank	BT029377	1e-120	BT029377.1 Arabidopsis thaliana At3g49930 mRNA, complete cds.
GenBank	CP002686	1e-120	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010426524.1	1e-162	PREDICTED: zinc finger protein AZF1-like
Swissprot	Q9SSW1	1e-68	AZF1_ARATH; Zinc finger protein AZF1
TrEMBL	R0HHN9	1e-106	R0HHN9_9BRAS; Uncharacterized protein
STRING	XP_010426524.1	1e-162	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3121	22	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49930.1	2e-73	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]