PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g052480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 184aa    MW: 21347.1 Da    PI: 8.0908
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g052480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.11.4e-1172130563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     ++ +rk +NRe+A+rsR++K++ +ee      +L+++N++L ++l   + ++++  +e+
  Csa09g052480.1  72 RKKKRKLSNRESAKRSREKKQKHLEEMSIQLNQLKTQNHELTNQLRYVSYHCQRTNTEN 130
                     6899*****************************************99999999888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.9E-1165125No hitNo description
SMARTSM003381.1E-1368132IPR004827Basic-leucine zipper domain
PfamPF077162.4E-969116IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.61170133IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-972120No hitNo description
CDDcd147024.69E-1773124No hitNo description
PROSITE patternPS0003607590IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MMSTISPVFS AEPSLATFVP AFETGFTPWD ISHLFSIFDS SLEPIQSPAH DFASRNPTSS  60
DVAPTEENTD ERKKKRKLSN RESAKRSREK KQKHLEEMSI QLNQLKTQNH ELTNQLRYVS  120
YHCQRTNTEN ERLRLENRIL QDKLLNIRQV LMFRQIERSL NCSTWPCDNS TVLTVQQDPS  180
MIY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17077ERKKKRKL
27192RKKKRKLSNRESAKRSREKKQK
37277KKKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g052480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426502.11e-134PREDICTED: bZIP transcription factor 2-like
TrEMBLD7LSY02e-96D7LSY0_ARALL; BZIP transcription factor family protein
STRINGXP_010426502.11e-134(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.15e-83basic leucine-zipper 5