PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g052090.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HSF

Protein Properties

Length: 231aa MW: 26884 Da PI: 8.8354

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g052090.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	47.8	3.9e-15	13	100	2	97
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT-.-HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhs.nfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 F ++y++++d++++++isw +n nsf++++ e f +k++p+ + f+SFv L gFk+vk +++ eF +++F ++ ell+ Csa09g052090.1 13 FYVRVYQVVDDPSTDSIISWGSN-NSFIIWNVEGFRRKIMPTCVEFGiTFSSFVSRLRSHGFKRVKGPRQ--------LEFGDEYFVVDQPELLK 98 78899**************99.9*************88765379***************996........59999999999999988 PP XX CS HSF_DNA-bind 96 ki 97 + Csa09g052090.1 99 LM 100 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.3E-18	9	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.86E-15	10	100	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	7.6E-16	11	97	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.4E-13	13	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-6	13	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-6	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MVHNYFPRGL SLFYVRVYQV VDDPSTDSII SWGSNNSFII WNVEGFRRKI MPTCVEFGIT 60 FSSFVSRLRS HGFKRVKGPR QLEFGDEYFV VDQPELLKLM MVEALRTKRN AKKAKAKAKK 120 DRVQVEEEQR ELVESESSVK FLEVVVSKCM LLLPNDDGME ALRDCEYFRG YNRSRLLWER 180 VQKELEADPP GGYLLYASHL QLLVSNQLER FCENKDKKMN QAVVYIIVPH *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g052090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010431177.1	1e-171	PREDICTED: heat stress transcription factor A-6a-like
TrEMBL	R0GJE4	3e-45	R0GJE4_9BRAS; Uncharacterized protein
STRING	XP_010431177.1	1e-171	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3839	14	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	9e-30	Winged helix-turn-helix transcription repressor DNA-binding