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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa09g041200.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
MYB_related |
| Protein Properties |
Length: 294aa MW: 33858.1 Da PI: 10.3763 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa09g041200.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 55.9 | 1e-17 | 98 | 143 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
Csa09g041200.1 98 RGKMTPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 143
89********************.*********.************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MVNQAEKELF TNKKKDKREK EWERDKNDAR GKPERSMDRT GGHTSGKFRS LIWRPTMGFY 60
SKSIRFEGGG RKIRIGLNRT GKSCRLRWVN YLHPGLKRGK MTPQEERLVL ELHAKWGNRW 120
SKIARKLPGR TDNEIKNYWR THMRKKAQEK KRPVSPTSSF SNCSSSSMTT TTTNTQESSC 180
HSRKSSGKVS FYDTGGSRST GDMMNQEAED IYSMDDIWRE IDHSAVNIIK PVKDIYSEQS 240
HCLSYPTLAS PTWESSLDSI WNMDADKSKM SSSFANDQFP FCFQYSRSPW SSG*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. {ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK176475 | 0.0 | AK176475.1 Arabidopsis thaliana mRNA for Myb DNA binding protein -like, complete cds, clone: RAFL24-27-H12. |
| GenBank | DQ075255 | 0.0 | DQ075255.1 Arabidopsis thaliana MYB transcription factor MYB48-1 (At3g46130) mRNA, complete cds, alternatively spliced. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Nishida S,Kakei Y,Shimada Y,Fujiwara T
Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
Plant J., 2017. 91(4): p. 741-753
[PMID:28586097] - Imran QM, et al.
Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
Sci Rep, 2018. 8(1): p. 771
[PMID:29335449]
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