 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa09g035690.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
C2H2 |
| Protein Properties |
Length: 244aa MW: 26474.7 Da PI: 6.7929 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa09g035690.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.9 | 0.00016 | 217 | 239 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+C+ C+k+F++ L++H + H
Csa09g035690.1 217 SCGSCKKTFNSGNALESHNKAkH 239
6*****************88766 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MEFWGIEVKP GKPVKVTPER HTLIHVSQAS LGECKNKKEE FVSVHVKVGD QKLVMGNLST 60
ENIPQLFCDL VFEKEFELSH NWGKGSLYFV GYTSPNIADN DGEDFSDSEE EEEEVEEVPA 120
TITANGNPKP KAKPAQVKKN AKPADGMVVD EDSEEEEETP TPKKPVSSKK RANEEAPKTP 180
VSSKKAKVAV TPQKTDEKKK GGKNPATQSP KSASQVSCGS CKKTFNSGNA LESHNKAKHA 240
AAK*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Required for histone H3 'Lys-9' deacetylation. Involved in rRNA gene silencing in nucleolar dominance. Seems to be implicated in the regulation of genes involved in seeds development. {ECO:0000269|PubMed:10792817, ECO:0000269|PubMed:12694598, ECO:0000269|PubMed:14992728, ECO:0000269|PubMed:15144374}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AF195545 | 2e-93 | AF195545.1 Arabidopsis thaliana putative histone deacetylase (HD2A) mRNA, complete cds. |
| GenBank | AY065396 | 2e-93 | AY065396.1 Arabidopsis thaliana putative histone deacetylase (At3g44750) mRNA, complete cds. |
| GenBank | AY096729 | 2e-93 | AY096729.1 Arabidopsis thaliana putative histone deacetylase (At3g44750) mRNA, complete cds. |
| Publications
? help Back to Top |
- Song Y,Wu K,Dhaubhadel S,An L,Tian L
Arabidopsis DNA methyltransferase AtDNMT2 associates with histone deacetylase AtHD2s activity.
Biochem. Biophys. Res. Commun., 2010. 396(2): p. 187-92
[PMID:20331964] - Lee K,Park OS,Jung SJ,Seo PJ
Histone deacetylation-mediated cellular dedifferentiation in Arabidopsis.
J. Plant Physiol., 2016. 191: p. 95-100
[PMID:26724747] - Han Z, et al.
AtHD2D Gene Plays a Role in Plant Growth, Development, and Response to Abiotic Stresses in Arabidopsis thaliana.
Front Plant Sci, 2016. 7: p. 310
[PMID:27066015] - Li H, et al.
Plant-Specific Histone Deacetylases HDT1/2 Regulate GIBBERELLIN 2-OXIDASE2 Expression to Control Arabidopsis Root Meristem Cell Number.
Plant Cell, 2017. 29(9): p. 2183-2196
[PMID:28855334]
|
