PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g022470.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 267aa    MW: 30409.3 Da    PI: 9.9204
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g022470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-152368147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W   Ed +l ++v+ +G+ +W+ Ia+ m+ gRt+k+c++rw++ 
   Csa09g022470.1 23 RGHWRISEDTQLMELVAAYGPQNWNHIAENMQ-GRTGKSCRLRWFNQ 68
                     789999**************************.***********996 PP
2Myb_DNA-binding47.83.4e-1576119247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +++ eE+e+l+ a++ +G++ W+ Ia+ +  gRt++ +k++w+ +
   Csa09g022470.1  76 RAFSVEEEERLLAAHRAFGNK-WAMIAKLFT-GRTDNALKNHWHVL 119
                      689******************.********9.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5771869IPR017930Myb domain
SMARTSM007171.8E-112271IPR001005SANT/Myb domain
PfamPF002493.0E-152368IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-2723116IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-242476IPR009057Homeodomain-like
CDDcd001671.79E-102667No hitNo description
PROSITE profilePS5129424.53970124IPR017930Myb domain
SMARTSM007171.3E-1274122IPR001005SANT/Myb domain
PfamPF002491.1E-1176119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-1977124IPR009057Homeodomain-like
CDDcd001677.02E-977120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MMQKKSDDLK KKKKQSGSRV CSRGHWRISE DTQLMELVAA YGPQNWNHIA ENMQGRTGKS  60
CRLRWFNQLD PRINKRAFSV EEEERLLAAH RAFGNKWAMI AKLFTGRTDN ALKNHWHVLM  120
ARKMRQQSSS YVQRFNGGST HKPNTDHKIF NLSPGNADDE DMNLKKYSWE MLKEETTNLK  180
AQYLQEEYCS SRMPMQGPHH HYSTFPADSL ALTLHVSIQE PSSSSSSSSS SSLSLPSSST  240
AEHTMVTRYI ETTKPPAFID FLGVGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-31231244105MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-31231244105C-Myb DNA-Binding Domain
1msf_C7e-31231244105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g022470.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2727321e-167AF272732.1 Arabidopsis thaliana putative transcription factor (MYB110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502911.11e-170PREDICTED: transcription factor WER isoform X2
SwissprotQ9SEZ43e-62MY105_ARATH; Transcription factor MYB105
TrEMBLR0FTE61e-163R0FTE6_9BRAS; Uncharacterized protein
STRINGXP_010430864.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-152myb domain protein 110
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]