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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa09g015930.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
MYB |
| Protein Properties |
Length: 440aa MW: 50009.7 Da PI: 7.896 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa09g015930.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 60.3 | 4.1e-19 | 193 | 239 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEd+llv++v+ +G++ W+ Ia++++ gR +kqc++rw+++l
Csa09g015930.1 193 KGQWSPEEDKLLVKLVESHGTKKWSQIAKMLQ-GRVGKQCRERWHNHL 239
799*****************************.*************97 PP
|
| 2 | Myb_DNA-binding | 55.8 | 1e-17 | 246 | 287 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+ WT+eEd +l++a+k+ G++ W+ Iar+++ gRt++ +k++w+
Csa09g015930.1 246 DGWTEEEDIILIEAHKKIGNK-WAEIARKLP-GRTENTIKNHWN 287
56*******************.*********.***********8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010439 | Biological Process | regulation of glucosinolate biosynthetic process |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:1904095 | Biological Process | negative regulation of endosperm development |
| GO:2000692 | Biological Process | negative regulation of seed maturation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 440 aa
Download sequence Send
to blast |
MEFESVIKMH YPYLAAVIYD DNLTIKDEFS CVHNMHQKPI QINLDSSHLP SMPHTHEMPS 60
NETIRGITPS PCTETFETYF HGTSNNQGFF SMAYTTSQTV ESNVSHVTHE STMWENDQNQ 120
GFIFGTESTF NLALVESNQF NMPKPNLSAN EDTIISRGQN NQVMIKTEQV KKKNKRFQMR 180
RICKPAKKAS IIKGQWSPEE DKLLVKLVES HGTKKWSQIA KMLQGRVGKQ CRERWHNHLR 240
PDIKKDGWTE EEDIILIEAH KKIGNKWAEI ARKLPGRTEN TIKNHWNATK RRQHSRRAKG 300
KDEISLQLGS NTLQNYIRSV TYKDDTLTLM TPNSNVGPKN MRDKGKSVMA AVKEYEEDEC 360
KYIVDGVKNM DLDDKRKMTS LTAVSSTCAS TSGSASGSGS GVTMELDEPM TDSWMVMHGC 420
DEVMMNEIAL LEMIAHGRL*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes (PubMed:27681170, PubMed:25194028, PubMed:19066902). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner but via the expression of embryonic genes (e.g. LEC1, LEC2, FUS3 and WUS) (PubMed:18695688). May play an important role during embryogenesis and seed maturation (PubMed:19066902, PubMed:25194028). Together with MYB115, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). Regulates negatively maturation genes in the endosperm (PubMed:25194028). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by LEC2. {ECO:0000269|PubMed:25194028}. |
