PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g011190.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 121aa    MW: 13449.5 Da    PI: 8.3974
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g011190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.67.9e-4251041100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C+kdC++apyfp ++p+kfa++h+++Ga nv+k+l++lp+++r +a++sl++eA++r++dPvyG+vg+i+ lq q++++++ela
  Csa09g011190.1   5 RCAACKYLRRRCPKDCIFAPYFPPNDPAKFACIHRIYGAGNVSKMLQQLPDQTRAEAVESLCFEAKCRVDDPVYGCVGIIHLLQTQIQNAQNELA 99 
                     6********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  Csa09g011190.1 100 KTQAE 104
                     *9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.6424105IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-415102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MNPKRCAACK YLRRRCPKDC IFAPYFPPND PAKFACIHRI YGAGNVSKML QQLPDQTRAE  60
AVESLCFEAK CRVDDPVYGC VGIIHLLQTQ IQNAQNELAK TQAEVAVAQT KLSQTQNSDF  120
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-38610512111LOB family transfactor Ramosa2.1
5ly0_B9e-38610512111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g011190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738461e-148AB473846.1 Arabidopsis thaliana ASL13 mRNA for ASYMMETRIC LEAVES2-like 13 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425374.11e-85PREDICTED: LOB domain-containing protein 24
SwissprotP594684e-83LBD24_ARATH; LOB domain-containing protein 24
TrEMBLR0FT524e-80R0FT52_9BRAS; Uncharacterized protein
STRINGXP_010425374.14e-85(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.12e-85LOB domain-containing protein 24