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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g009280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Trihelix | ||||||||
Protein Properties | Length: 278aa MW: 30918.4 Da PI: 6.1765 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 92.4 | 4.6e-29 | 60 | 144 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e+l Li +r em++ ++++k++k+lWee+s+kmre+gf rsp++C++kw+n+ k++kk k+++ k ts+ s+ y++++e Csa09g009280.1 60 WVQDETLSLISLRGEMDNLFNTSKSNKHLWEEISSKMREQGFDRSPTMCTDKWRNILKEFKKAKHQDDKSTSGGASKTCYYKEIE 144 **********************************************************************999999999***998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-4 | 51 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.316 | 52 | 116 | IPR017877 | Myb-like domain |
SMART | SM00717 | 7.5E-4 | 56 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.20E-30 | 58 | 123 | No hit | No description |
Pfam | PF13837 | 6.0E-20 | 59 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MFVSDNNSSR DINMMIDVTT SNGDLPTQQQ QHHHQQIILG DSSGGEDHEI KTPKKRAETW 60 VQDETLSLIS LRGEMDNLFN TSKSNKHLWE EISSKMREQG FDRSPTMCTD KWRNILKEFK 120 KAKHQDDKST SGGASKTCYY KEIEDIFRER NKKVALYKSP ATPPPSSSAK VDSFMQFTDK 180 GFEDTGISFT SVEANGRPTL NLETQLDHDG LPLAIASADP VTANGVTAWN WRDASGNGGD 240 GQPFVGRIIT VKFGEYTRRV GIDGTAEAIK EAIQIRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 3e-42 | 54 | 142 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g009280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB072370 | 0.0 | AB072370.1 Arabidopsis thaliana mRNA for transcription factor GT-4, complete cds. | |||
GenBank | BT011951 | 0.0 | BT011951.1 Arabidopsis thaliana At3g25990 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010514227.1 | 1e-176 | PREDICTED: trihelix transcription factor GT-4-like isoform X1 | ||||
Refseq | XP_010514228.1 | 1e-176 | PREDICTED: trihelix transcription factor GT-4-like isoform X2 | ||||
Swissprot | Q9LU92 | 1e-156 | TGT4_ARATH; Trihelix transcription factor GT-4 | ||||
TrEMBL | R0HJX1 | 1e-170 | R0HJX1_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Bostr.0556s0275.1.p | 1e-179 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2891 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25990.1 | 1e-150 | Trihelix family protein |