PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g003130.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 346aa    MW: 38925.6 Da    PI: 9.5418
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g003130.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like42.91.1e-131782082555
         G2-like  25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kA+Pk+ilelm+v+gL +e+v+SHLQk+Rl
  Csa09g003130.1 178 RKAVPKRILELMHVPGLNRENVASHLQKFRL 208
                     69****************************8 PP
2Response_reg75.61.8e-25131211109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +l+vdD+ + + +l+++l +  y +v+ +++++ al++l+e++  +Dl+l D+ mpgm+G++ll++   e  +lp+i+++a g  +++   ++ G
  Csa09g003130.1  13 ILVVDDDTSCLFILKKMLLRLMY-QVTICSQADVALTILRERKncFDLVLSDVHMPGMNGYKLLQQVGLEM-DLPVIMMSADGRTTTVMTGINHG 105
                     89*********************.***************999999**********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ peel +
  Csa09g003130.1 106 ACDYLIKPIRPEELKN 121
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.29E-359138IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.2E-4110155No hitNo description
SMARTSM004481.2E-2911123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.89312127IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-2213121IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.25E-2714126No hitNo description
SuperFamilySSF466891.97E-7175212IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-11178208IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-12178213IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAINDQFPNG LRILVVDDDT SCLFILKKML LRLMYQVTIC SQADVALTIL RERKNCFDLV  60
LSDVHMPGMN GYKLLQQVGL EMDLPVIMMS ADGRTTTVMT GINHGACDYL IKPIRPEELK  120
NIWQHVVRRK CVMNKELRSS LAIEDNNKNS GSVETVFSVS ECSEESLMKR RTKKKKKRKA  180
VPKRILELMH VPGLNRENVA SHLQKFRLYL KRLSGAASQS KDTECIKRYE NIQALVSSGQ  240
VHPQTLAALF GQPIDNHLSA SFGVWIPNDD LGRSQTQNFA VDVSSASNRS VSVTNPMAVH  300
GLSSSANFSQ KDDVNNNTDH RIRQGYGSNV NEESWILERS SRQRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gwr_A9e-14121187111DNA-binding response regulator mtrA
3nhz_A5e-14121187111Two component system transcriptional regulator mtrA
3nhz_B5e-14121187111Two component system transcriptional regulator mtrA
3nhz_C5e-14121187111Two component system transcriptional regulator mtrA
3nhz_D5e-14121187111Two component system transcriptional regulator mtrA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168177KRRTKKKKKR
2169175RRTKKKK
3169177RRTKKKKKR
4172178KKKKKRK
5173178KKKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g003130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0881490.0AY088149.1 Arabidopsis thaliana clone 41875 mRNA, complete sequence.
GenBankAY0997260.0AY099726.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
GenBankAY1288870.0AY128887.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502166.10.0PREDICTED: two-component response regulator ARR14-like isoform X2
SwissprotQ8L9Y30.0ARR14_ARATH; Two-component response regulator ARR14
TrEMBLR0H7860.0R0H786_9BRAS; Two-component response regulator
STRINGXP_010424949.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.11e-106response regulator 14