PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g062350.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 571aa    MW: 64373.2 Da    PI: 7.3661
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g062350.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-18101147148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av ++ g++Wk+Ia+ ++  Rt+ qc +rwqk+l
   Csa08g062350.1 101 KGGWTPEEDETLRQAVDKYKGKRWKKIAEFFP-DRTEVQCLHRWQKVL 147
                      688*****************************.************986 PP
2Myb_DNA-binding60.63.3e-19153199148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+++v++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
   Csa08g062350.1 153 KGPWTKEEDDKIVELVNKYGPAKWSVIAKSLP-GRIGKQCRERWHNHL 199
                      79******************************.*************97 PP
3Myb_DNA-binding51.91.7e-16205248146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE+  l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
   Csa08g062350.1 205 KDAWTVEEESALMNAHRVYGNK-WAEIAKVLP-GRTDNAIKNHWNS 248
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.14196147IPR017930Myb domain
SMARTSM007172.1E-16100149IPR001005SANT/Myb domain
PfamPF002491.2E-16101147IPR001005SANT/Myb domain
SuperFamilySSF466894.45E-16102157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-21103153IPR009057Homeodomain-like
CDDcd001672.23E-14104147No hitNo description
PROSITE profilePS5129431.167148203IPR017930Myb domain
SuperFamilySSF466895.24E-32150246IPR009057Homeodomain-like
SMARTSM007174.8E-18152201IPR001005SANT/Myb domain
PfamPF002493.0E-18153199IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-27154202IPR009057Homeodomain-like
CDDcd001671.84E-15155199No hitNo description
Gene3DG3DSA:1.10.10.601.6E-23203254IPR009057Homeodomain-like
PROSITE profilePS5129422.675204254IPR017930Myb domain
SMARTSM007173.3E-16204252IPR001005SANT/Myb domain
PfamPF002491.3E-14205248IPR001005SANT/Myb domain
CDDcd001677.04E-12207250No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MSSSSIPAAC SPIKEEVSEM QIDIQCMENK QPLAAPCSSA SEGSGCFFLK SPEIATPATA  60
SPTPRYFYYL FRFQLPSLNS DALKSYLESC RRTSGPMRRA KGGWTPEEDE TLRQAVDKYK  120
GKRWKKIAEF FPDRTEVQCL HRWQKVLNPE LVKGPWTKEE DDKIVELVNK YGPAKWSVIA  180
KSLPGRIGKQ CRERWHNHLN PDIKKDAWTV EEESALMNAH RVYGNKWAEI AKVLPGRTDN  240
AIKNHWNSSL KKKLEFYLAT GNLPPPATKF CLLNDNADGD RDSKQSSATK PFKDSDSATQ  300
TSSGNTDSDE VGRDHFDASS ALLEELAATR RISFNEYACS PVEYKPQLPN LEPIPEEVRI  360
NSKAYYERSI QRKEENVFGT PKHGNLYYKS PLDYYFPSEA DRQRMYRYEC GCSPVAESPV  420
GLMTPPCNKD SGLAATRSPE SFLREAARTF PNTPSIFRKR RKVVLAAKTN DDVVSVGVKE  480
AHQKEESKDS SDISPAGREI LMLETTDDCR DDEKLESNGN VFNVSPPYRL RAKRTAVIKS  540
RQLEFTSAKE KQPDDETETS ELASEENKPV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-711002545159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-711002545159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g062350.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196490.0AY519649.1 Arabidopsis thaliana MYB transcription factor (At5g02320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423876.10.0PREDICTED: uncharacterized protein LOC104708918
SwissprotQ6R0320.0MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLR0FDT20.0R0FDT2_9BRAS; Uncharacterized protein
STRINGXP_010423876.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.20.0myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]