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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g060760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HSF | ||||||||
Protein Properties | Length: 417aa MW: 46754.3 Da PI: 4.7033 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 107.3 | 1.2e-33 | 53 | 144 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++++++d++l+ +isw +g sfvv+d+ efa+ +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++ weF+++ F +gkk+ll++ Csa08g060760.1 53 FLSKTFDLVDDPTLDPVISWGLTGASFVVWDPLEFARIILPRNFKHNNFSSFVRQLNTYGFRKIHTDK---------WEFANEAFLRGKKHLLKN 138 9****************************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r++s Csa08g060760.1 139 IQRRRS 144 ***987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.0E-33 | 48 | 142 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.1E-55 | 49 | 142 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.4E-35 | 49 | 142 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.1E-29 | 53 | 142 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-17 | 53 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-17 | 91 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 92 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-17 | 104 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MSPKKDDFFS KPTPISVPPG SLYCVDADTM GSSPPPPLPI PLDLLQGNQV PPFLSKTFDL 60 VDDPTLDPVI SWGLTGASFV VWDPLEFARI ILPRNFKHNN FSSFVRQLNT YGFRKIHTDK 120 WEFANEAFLR GKKHLLKNIQ RRRSPQSNQT CTSSSCSQSQ GSPTEVGGEI EKLRKERRAL 180 MEEMVELQQQ SRGTARHVDS VNQRLKAAEQ RQKQLLSFLA KLFQNPGFLE RMKNLKGREK 240 GALGFEKARR KFIKPQQQQP QDSPTAGEMV KCEADDWERL LMYDEETENT LLSDQQGMTS 300 SVGGADPKGK NLMNLSEEEM TEPDYFMTFP SPEGLVKQEE TTWSIGFDTT IPSFSNTDVW 360 GNTVDYNDVS EFGSVAETTS GGALPDVYWE QFAAGITETG FNWPSGDDDN TPINDP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-24 | 50 | 147 | 17 | 125 | Heat shock factor protein 1 |
5d5u_B | 6e-24 | 48 | 142 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-24 | 48 | 142 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-24 | 48 | 142 | 24 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress response. Activated by DREB2A under heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g060760.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117318 | 0.0 | AK117318.1 Arabidopsis thaliana At5g03720 mRNA for putative heat shock transcription factor, complete cds, clone: RAFL16-88-H09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019084541.1 | 0.0 | PREDICTED: heat stress transcription factor A-3-like isoform X1 | ||||
Refseq | XP_019084542.1 | 0.0 | PREDICTED: heat stress transcription factor A-3-like isoform X2 | ||||
Swissprot | Q8GYY1 | 0.0 | HSFA3_ARATH; Heat stress transcription factor A-3 | ||||
TrEMBL | D7LWT0 | 0.0 | D7LWT0_ARALL; AT-HSFA3 | ||||
STRING | XP_010423674.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10950 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 0.0 | heat shock transcription factor A3 |