 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa08g060690.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 210aa MW: 24135.3 Da PI: 6.9138 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa08g060690.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 43.4 | 6e-14 | 73 | 105 | 24 | 56 |
S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ e++ +LA++l+L+ rqV vWFqNrRa++k
Csa08g060690.1 73 KLDSERKLKLARELDLEPRQVAVWFQNRRARWK 105
78999***************************9 PP
|
| 2 | HD-ZIP_I/II | 86.9 | 2.5e-28 | 70 | 134 | 20 | 84 |
HD-ZIP_I/II 20 eeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84
++ kL++erK +lareL+l+prqvavWFqnrRAR+k k+lE+ y++L+++yda+ +e+++L++e
Csa08g060690.1 70 KDFKLDSERKLKLARELDLEPRQVAVWFQNRRARWKVKHLEESYDSLRQEYDAVWREKQMLHDER 134
3449*********************************************************9875 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 210 aa
Download sequence Send
to blast |
MHGRSLTSLT RSAASAIILT ENFCDFFNLS CNLFYYTTED SSNKAAYTQT GPVISIPESE 60
KIINAYQCSK DFKLDSERKL KLARELDLEP RQVAVWFQNR RARWKVKHLE ESYDSLRQEY 120
DAVWREKQML HDERPLTSHN KLICDAGDET ENYNIKRSRF DDMMNINQIA EGALLLVVVA 180
DLGERTKKAC TIISKVQSDA IRESLKQIS*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KM214233 | 1e-56 | KM214233.1 Capsella grandiflora isolate C.g926a RCO-A (RCO-A) gene, complete cds. |
| GenBank | KM214234 | 1e-56 | KM214234.1 Capsella grandiflora isolate C.g926b RCO-A (RCO-A) gene, complete cds. |
