PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g057230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 594aa    MW: 66470.6 Da    PI: 7.4196
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g057230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.21.2e-20228281155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k++++Wt  L + F++a++++ G +kA+Pk+il +m+v  Lt+e+v+SHLQkYR+
  Csa08g057230.1 228 KTKVKWTDGLNDLFLQAIRHI-GLDKAVPKKILAFMNVSYLTRENVASHLQKYRI 281
                     6899*****************.********************************6 PP
2Response_reg65.82e-22181331109
                     EEEESSSHHHHHHHHHHHHHTTC.....EEEEEES..SHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
    Response_reg   1 vlivdDeplvrellrqalekegy.....eevaead..dgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                     vl+vdD+p++r  + q+l k++y     +e+++ d  d+++al +lk+++  +Dli++D  mp ++Gl+l ++i+ee  +lp+ivv+a ++    
  Csa08g057230.1  18 VLVVDDDPVFRGYISQMLVKSKYrdpsvMEITVIDeaDPTKALSILKHQRnnIDLIITDYYMPSLNGLQLKRRITEEIGNLPVIVVSADAN--KE 110
                     89*****************888865555555555422678999999888888***********************9999********9888..67 PP

                     HHHHHTTESEEEESS--HHHHHH CS
    Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                     +e l+ Ga++fl Kp+   +l k
  Csa08g057230.1 111 QESLSCGAMGFLPKPIRATDLPK 133
                     89**************9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.4E-2416155No hitNo description
SuperFamilySSF521722.56E-2316140IPR011006CheY-like superfamily
SMARTSM004486.4E-1916135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.63917139IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.1E-2018134IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.20E-2219131No hitNo description
SuperFamilySSF466895.02E-16226285IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-21226285IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-24228281IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MAFAESLHNK SSVLRINVLV VDDDPVFRGY ISQMLVKSKY RDPSVMEITV IDEADPTKAL  60
SILKHQRNNI DLIITDYYMP SLNGLQLKRR ITEEIGNLPV IVVSADANKE QESLSCGAMG  120
FLPKPIRATD LPKIYQLALT CKRNGKSTLG TEPNHKANDT GVSVPQQIKM LPEQANVLKT  180
RKKYSSKADS RSLNSRNGSC LISTGGSRKN RKRKPNGGSE DGSQPSKKTK VKWTDGLNDL  240
FLQAIRHIGL DKAVPKKILA FMNVSYLTRE NVASHLQKYR IFLRKVADQG LMSIMSARGI  300
DSMFRHTQIK EPYFNRYTPS TSWYDTSLNN RSFYSKPGQG FGQSRLLSTT REPPVRFNQM  360
PYNYMNRSST YETHHVGSGS NLTLPIQSNL SLANQPSQNE EIRSFFEPPV MANKIGQTSQ  420
VQGFGQLGPS AINNFNNNMM SSFGSFTPNQ PGLGHFSYGM QSFLTNENTA YNPEPHANAT  480
TQPNHELPQL ENELPSFFSA ELNQFLSLED DEVCTFVNVN EGHYNGEIAN TFAAPEMNHT  540
FAAPEMNPPS FNTNPNQNQE QDANPDIGDW SFLDPQDLVD DDFMNSLFNN DMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-18227287464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g057230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1636520.0AL163652.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T28J14 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423240.10.0PREDICTED: putative two-component response regulator ARR21
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLR0H0F30.0R0H0F3_9BRAS; Uncharacterized protein
STRINGXP_010423240.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21