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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g056890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C3H | ||||||||
Protein Properties | Length: 316aa MW: 36309.6 Da PI: 8.1068 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.7 | 1.7e-07 | 98 | 117 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ G C++Gd+C FaHg Csa08g056890.1 98 CPAFRN-GACHRGDSCEFAHG 117 666666.*************9 PP | |||||||
2 | zf-CCCH | 22.7 | 1.7e-07 | 168 | 187 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ G C++Gd+C FaHg Csa08g056890.1 168 CPAFRN-GACHRGDSCEFAHG 187 666666.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.0E-4 | 92 | 118 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.427 | 92 | 119 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.0E-6 | 97 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 98 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-4 | 162 | 188 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.427 | 162 | 189 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.0E-6 | 167 | 187 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-5 | 168 | 190 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 22 | 197 | 220 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MLKSVSPMAF YDIGDQQYSA LGYIVSKPGN VGAYDIDTPM PTIDDAIYGS DEFRMYAYKI 60 KRCPRTRSHD WTECPYAHRG EKATRRDPRR YTYCAVACPA FRNGACHRGD SCEFAHGVFE 120 YWLHPARYRT RACNAGNFHD WTECPYAHRG EKATRRDPRR HTYCAVACPA FRNGACHRGD 180 SCEFAHGVFE YWLHPARYRT RACNAGNLCQ RKVCFFAHAP EQLRQSEGKH RCRYAYRPVR 240 ARGGNSNGVA MRLDGEDYDT SRTPEKSGKS GLDSNEEKVL LKCWSRMSIV DDHYEPSDLD 300 FDLNFHLDWI SELVD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Embryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g056890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254592 | 0.0 | AC254592.1 Capsella rubella clone CAP08-D18, complete sequence. | |||
GenBank | AY350713 | 0.0 | AY350713.1 Capsella rubella clone BAC Cr33L6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010423197.1 | 1e-131 | PREDICTED: zinc finger CCCH domain-containing protein 54 | ||||
Swissprot | O65036 | 1e-116 | C3H54_ARATH; Zinc finger CCCH domain-containing protein 54 | ||||
TrEMBL | Q6V5F9 | 1e-121 | Q6V5F9_9BRAS; Zn-finger transcription factor | ||||
STRING | XP_010423197.1 | 1e-130 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11527 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07500.1 | 1e-118 | C3H family protein |