PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g056700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 337aa MW: 38199.2 Da PI: 8.9791 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.5 | 2.2e-56 | 17 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++kv + +++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ Csa08g056700.1 17 LPPGFRFHPTDEELITHYLHNKVLDMAFSA-KAIGEVDLNKAEPWELPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIYR- 109 79**************************99.88***************99999*****************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grapkg kt+Wvmheyrl Csa08g056700.1 110 GKSLVGMKKTLVFYRGRAPKGLKTNWVMHEYRL 142 999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.22E-64 | 13 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.855 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-29 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MEAFGGFHKE DDEQMDLPPG FRFHPTDEEL ITHYLHNKVL DMAFSAKAIG EVDLNKAEPW 60 ELPYKAKMGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA TGKDKEIYRG KSLVGMKKTL 120 VFYRGRAPKG LKTNWVMHEY RLDGKLSAHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI 180 RIGSYGTGSS LPPLTDSSTY NDKTKTEPVY VPCFSNQAET RGTTLLNCFS NSSLSSSIQP 240 EFLQMIPLYQ PHQSLNVSEN LQSSNPVLTQ EQSVLQAMIE NNKRQSFKTL NINSQETGAS 300 NTDQSSVFEF GRKRFDHQEV PSSSAGPLDL EPFWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-56 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-56 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-56 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-56 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-56 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-56 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-56 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-56 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00496 | DAP | Transfer from AT5G07680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g056700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228027 | 0.0 | AK228027.1 Arabidopsis thaliana mRNA for no apical meristem (NAM) -like protein, complete cds, clone: RAFL14-54-D06. | |||
GenBank | BT006419 | 0.0 | BT006419.1 Arabidopsis thaliana At5g07680 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010423179.1 | 0.0 | PREDICTED: NAC domain-containing protein 79 | ||||
Swissprot | Q9FLR3 | 0.0 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | R0HBK3 | 0.0 | R0HBK3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010423179.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 0.0 | NAC domain containing protein 80 |
Publications ? help Back to Top | |||
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