PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 272aa MW: 30749.2 Da PI: 6.9698

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g056300.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	88.7	1.3e-27	48	115	3	70
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 g+kdrhsk+ T +g RdRR+Rls+ +a++++dLq++LG+ ++sk i+WLl++ak ++ l+ +++++ Csa08g056300.1 48 GGKDRHSKVFTVRGVRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWLLEAAKNDVDLLPPLQFPPG 115 78***********************************************************9977765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.8E-26	49	117	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.644	49	107	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MDMRLNPSRE DMIRFKQEVE DRNQPSSLSL SRQRWNNPRI VRVSRTFGGK DRHSKVFTVR 60 GVRDRRIRLS VMTAIQVYDL QERLGLSQPS KVIDWLLEAA KNDVDLLPPL QFPPGFHQVI 120 NPNLSGLGES FPGVFESFDL GGCSNRENLD LEKMKWVKFD QDSNLDHGFD IDHHHNVSNS 180 IQSNKVYFPT TTTTTTSASS SYHYNLGHLQ QYLLDQSGNV TVAFSNTSNL NPPAVETVSS 240 LFPRYPSFIG GGQLQLFSEN SNSSNQTDRV E*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-17	54	108	1	55	Putative transcription factor PCF6
5zkt_B	1e-17	54	108	1	55	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00497	DAP	Transfer from AT5G08070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g056300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL357612	1e-108	AL357612.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project).
GenBank	BT029995	1e-108	BT029995.1 Arabidopsis thaliana At5g08070 mRNA, complete cds.
GenBank	CP002688	1e-108	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010423139.1	0.0	PREDICTED: transcription factor TCP17-like
Swissprot	Q9LEZ9	1e-123	TCP17_ARATH; Transcription factor TCP17
TrEMBL	R0H8V5	1e-144	R0H8V5_9BRAS; Uncharacterized protein
STRING	XP_010423139.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3576	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08070.1	1e-120	TCP domain protein 17

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]