PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g054480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family EIL
Protein Properties Length: 279aa    MW: 32300.4 Da    PI: 4.221
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g054480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3152.65.1e-47261361113
                     XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
            EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 
                     ++lk+rmwkd++l+++lk++k+++    ++ ++ +   ++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pekgkp +g+sdsLr+WW
  Csa08g054480.1  26 DDLKRRMWKDRNLMEKLKQQKRHNN---DV-VSLT--THRAEASRRKKMARSQDSVLKYMMKIMEVCKAKGFVYGIVPEKGKPITGSSDSLRRWW 114
                     79********************964...44.4443..4899****************************************************** PP

                     XXXXXXXXXXXXXXXXX....X CS
            EIN3  96 kekvefdrngpaaisky....q 113
                     ke+++f++n+p ai++y    +
  Csa08g054480.1 115 KENIQFEQNAPDAITDYltlaA 136
                     *****************75542 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.5E-4626135No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVEVEEMEAL SPDEEEEEEE EEISYDDLKR RMWKDRNLME KLKQQKRHNN DVVSLTTHRA  60
EASRRKKMAR SQDSVLKYMM KIMEVCKAKG FVYGIVPEKG KPITGSSDSL RRWWKENIQF  120
EQNAPDAITD YLTLAAAAAE IIDNCPKSDV SFGFGDKNSR TGHEIQCLYG PTQEPSQAPS  180
IVTNTTSEDD YSENSSAMDK RSDDDHSNDV NWMDYFWLDR MQNELHCSRR FEDDDDNDGT  240
GMELNQFTES DQSDNVNQST FSVWDMVCED KDIYSFDY*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g054480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3563321e-136AL356332.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T31P16 (ESSA project).
GenBankCP0026881e-136CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022553100.11e-115putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX168e-76EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A3N6QTY91e-117A0A3N6QTY9_BRACR; Uncharacterized protein
STRINGBra006050.1-P1e-112(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16143412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.15e-70EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]