PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g054010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 589aa MW: 65692.8 Da PI: 6.8006 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.4 | 4.6e-10 | 279 | 335 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + rk + g ++ +++Aa+a++ a++k+++ Csa08g054010.1 279 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWN 335 57*******************4444.2344336655.7799999*************97 PP | |||||||
2 | AP2 | 49.6 | 9.8e-16 | 378 | 429 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Csa08g054010.1 378 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 429 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.8E-8 | 279 | 335 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-13 | 279 | 344 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.94E-18 | 279 | 345 | No hit | No description |
SMART | SM00380 | 1.8E-18 | 280 | 349 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.753 | 280 | 343 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-10 | 280 | 343 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-6 | 281 | 292 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.26E-11 | 378 | 437 | No hit | No description |
Pfam | PF00847 | 4.1E-10 | 378 | 429 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-17 | 378 | 438 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.9E-31 | 379 | 443 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.111 | 379 | 437 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-18 | 379 | 437 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-6 | 419 | 439 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 589 aa Download sequence Send to blast |
MAPMTNWLTF SLSPMEMLRS SDQSQFVSYD ASSAASSSPY LLDNFYGWTN QKPQEFFKEE 60 AHLAAAASMA DSTILTTFVD PQSHTQSHIP KLEDFLGDSS SMVRYSDNSQ TETQDSSLTQ 120 IYDPRHHHNH NQTGFYSDHH DFKTMAGFQT AFSTNSGSEV DDSVSIGRTH LAGEYLGHVV 180 ESSSGPDLGF HGGSNNNTNT TGGALSLAVN VNNSTNQHRN DNEITNHHYR GGGERNNNNN 240 NNNENSEKTE SEKEKPIVAV ETSDCSNKKI ADTFGQRTSI YRGVTRHRWT GRYEAHLWDN 300 SCRREGQARK GRQGGYDKED KAARAYDLAA LKYWNATATT NFPITNYSKE LEDMKHMTKQ 360 EFIASLRRKS SGFSRGASIY RGVTRHHQQG RWQARIGRVA GNKDLYLGTF ATEEEAAEAY 420 DIAAIKFRGI NAVTNFEMNR YDVEAIMKSA LPIGGAAKRL KLSLEAASSE QKPILGHQLH 480 HFQQQQQQLQ LQSSPNHSSI NFALCPNSAV QSQQIIPCGI PFEAAALYHH QQQQQQQQQQ 540 QQNFFQHFPT NAASDSTGSN NNSNVQGSMG LMAPNPAEFF LWPNNQSY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g054010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY974197 | 0.0 | AY974197.1 Arabidopsis thaliana clone At5g10510 AP2/EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010422835.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 | ||||
Swissprot | Q52QU2 | 0.0 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | D7M2X9 | 0.0 | D7M2X9_ARALL; Uncharacterized protein | ||||
STRING | XP_010422835.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3333 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 0.0 | AINTEGUMENTA-like 6 |
Publications ? help Back to Top | |||
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