PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g053640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 306aa    MW: 34323.9 Da    PI: 9.4623
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g053640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.7e-1563107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++v+a +++  + Wk+I + +g  +t  q++s+ qky
   Csa08g053640.1  63 RENWTEQEHDKFVEALHLFDRD-WKKIEAFVG-SKTVVQIRSHAQKY 107
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-1757113IPR009057Homeodomain-like
PROSITE profilePS5129415.69458112IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-860113IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-1761110IPR006447Myb domain, plants
SMARTSM007171.5E-1162110IPR001005SANT/Myb domain
PfamPF002491.7E-1263107IPR001005SANT/Myb domain
CDDcd001673.95E-965108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MVSVNPRPKG FPYFDPVDMS LPSSSDGFGS TPVTGRTNNN NTVSFSEDQT TKIRKPYTIK  60
KSRENWTEQE HDKFVEALHL FDRDWKKIEA FVGSKTVVQI RSHAQKYFLK VQKSGANEHL  120
PPPRPKRKAT HPYPQKAPKN VAAFTSQAIG PAYLYTSDSQ SLLGNQPVCA STSSSSWNHE  180
PTTTNLPIPV IQEEPGVSAT ALPKNICTKE EDTTRRRVQV LTKPCEEESC EKPHRVMPDF  240
AEVYSFIGSV FDPNTSGHLQ RLKQMDPINM ETVLLLMRNL SVNLTSPEFA EQRRLISSYS  300
VKALK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g053640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936681e-114AB493668.1 Arabidopsis thaliana At4g01280 mRNA for hypothetical protein, partial cds, clone: RAAt4g01280.
GenBankAJ9372121e-114AJ937212.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like4 (lcl4 gene).
GenBankBT0247111e-114BT024711.1 Arabidopsis thaliana At4g01280 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010422790.10.0PREDICTED: protein REVEILLE 5-like
SwissprotC0SVG51e-175RVE5_ARATH; Protein REVEILLE 5
TrEMBLR0H8561e-178R0H856_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010422788.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.11e-179MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]