PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g053000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 311aa    MW: 34979.1 Da    PI: 8.2113
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g053000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B389.72.3e-2836121184
                     EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+kvltpsdv+k++rlv+pk++ae++   +  +++++ l ++d+ g+ W+++++y+ +s++yv+tkGW++Fvk+++L +gD+v F++
  Csa08g053000.1  36 FDKVLTPSDVGKLNRLVIPKQHAENYfplED-NQNGILLDFQDRLGKMWRFRYSYWDSSKSYVMTKGWSHFVKEKKLTSGDTVSFHR 121
                     89*********************999**744.45889************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-3729126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-2834121IPR015300DNA-binding pseudobarrel domain
CDDcd100175.63E-2534121No hitNo description
PfamPF023625.8E-2536121IPR003340B3 DNA binding domain
SMARTSM010192.8E-1736140IPR003340B3 DNA binding domain
PROSITE profilePS5086313.73336142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MNNSTTNPDQ ELTEIGATGS GTNNDLFNSE MREHMFDKVL TPSDVGKLNR LVIPKQHAEN  60
YFPLEDNQNG ILLDFQDRLG KMWRFRYSYW DSSKSYVMTK GWSHFVKEKK LTSGDTVSFH  120
RGCIPDGNAP ERRLKIVLID WSHKAERNKH GLSFGSYPTV TFYPAPEYSM PSHRSFPPFH  180
HNQYQQRESP GYGYGRIFNG GRYYEGSPLV YASVPVFPPA MLVPPPAPPQ PSTTRKLRLF  240
GVEVEESSSS GETRGEMGVP GHSSSSPVVI RDDDQSPWRS PRGEMGAGTS SAMQLCDDED  300
YKRKGKSLKL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-46321444113B3 domain-containing transcription factor NGA1
5os9_B3e-46321444113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g053000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1614921e-130AL161492.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 4.
GenBankCP0026871e-130CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankF11O41e-130AF096370.1 Arabidopsis thaliana BAC F11O4.
GenBankFJ8737341e-130FJ873734.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA4 (NGA4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010422713.10.0PREDICTED: B3 domain-containing transcription factor NGA4-like
SwissprotO825951e-156NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLD7M4V01e-161D7M4V0_ARALL; Uncharacterized protein
STRINGXP_010422713.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-133B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]