PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g029960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family FAR1
Protein Properties Length: 692aa    MW: 79134.1 Da    PI: 6.1467
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g029960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.52.5e-2479170190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke      +w v+++++ HnHel 
  Csa08g029960.1  79 EYYSAFARKSGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEVvdgVTHWFVSQFSNVHNHELL 170
                     69********************8888.*******************************************99866789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.3E-2279170IPR004330FAR1 DNA binding domain
PfamPF105518.9E-23302395IPR018289MULE transposase domain
PROSITE profilePS509669.47561609IPR007527Zinc finger, SWIM-type
PfamPF044342.9E-7581608IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6584611IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MSLNNIWIRR QQCPCGDWKC YIRFEGDESS CLVTKSELDS STTTTTTTAT GTGSSLYDNN  60
TVFMPYVGQI FRTDDEAFEY YSAFARKSGF SIRKARSTES QNLGVYRRDF VCYRSGFNQP  120
RKKANVEHPR ERKSVRCGCD AKLYLTKEVV DGVTHWFVSQ FSNVHNHELL EDDQVRLLPA  180
YRKIRQSDQD RILLLSKAGF PVNRIVKLLE LEKGVQPGQL PFIEKDVRNF VRACKKSVQE  240
NDAFLSEKRE SDTLELLESC KALAERDMDF AYDCTSDENQ KVENLAWAFG DSIGAYSLFG  300
DVVVFDTTYR SIPYGLLLGV FFGIDNHGKA ILLGCVLLQD ETCLSFTWAL QTFVRFMRGR  360
HPQTILTDMD TGLKDAIARE MPNTHHVVFM WHIVSKLASW FSQTLGSHYD EFRAGFEMFC  420
RAGNIDEFEQ QWNLLVTRFG LVPDRHADLL YSCRASWSPC YIREHFVAQT MTPEFNLSID  480
SFLKRIVAGP TCMQLLLEEV SAAASLAKQI PPRFTYPSLK TCMPMEDQAR GILTPYAFSV  540
LQNELVLSVQ YAVSEMANGP YIVHHFKKME GECCVIWNPE NEEIQCSCKE FEHSGILCRH  600
TLRVLTVKNC FLIPEQYFLL RWRQESPHVA AENQNGQGIG DDCAQTFHSL TETLLTESMI  660
CKDRLDYANQ ELSLLIDRVR NVAPANCLYQ P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g029960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankT26D30.0AF262043.1 Arabidopsis thaliana BAC T26D3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421694.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLR0FDR20.0R0FDR2_9BRAS; Uncharacterized protein
STRINGXP_010421693.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]