PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g029890.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 607aa    MW: 69685.4 Da    PI: 6.9522
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g029890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix521.9e-1697165276
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                     W+ +evlaL+++r+ +e+++ +       We+ s+k++e gf+rsp++Ckek+e+ ++ry + ++++++  ++++
  Csa08g029890.1  97 WCSDEVLALLRFRSTVENWFPEF-----TWEHTSRKLAEVGFKRSPQECKEKFEDEERRYFNGNNNNNNT-NDHQ 165
                     ********************998.....9*********************************99999984.4443 PP
2trihelix103.61.5e-32451545186
        trihelix   1 rWtkqevlaLiearr..........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                     rW+k+evlaLi++rr          +++++l++++++ plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+tcpyf+ql
  Csa08g029890.1 451 RWPKDEVLALINIRRsissmndddhKDGNSLSSSSKAVPLWERISKKMLEVGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRTCPYFHQL 544
                     8**************99999999888888999999*********************************************8.9***********9 PP

        trihelix  86 e 86 
                     +
  Csa08g029890.1 545 T 545
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-1195166No hitNo description
PROSITE profilePS500905.47196148IPR017877Myb-like domain
CDDcd122032.19E-25450525No hitNo description
PfamPF138371.4E-19450547No hitNo description
PROSITE profilePS500906.98451518IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MFDGGVPEQI HRFIASPPPA SPLPPHQSAA ERSLPFPISF ASYNTNHQAQ HILSLDSRKI  60
IHHHHHHHHH DIKDGGPTPA EWICHTDHDG DNHHHPWCSD EVLALLRFRS TVENWFPEFT  120
WEHTSRKLAE VGFKRSPQEC KEKFEDEERR YFNGNNNNNN TNDHQHISNY NNKGNNYRIF  180
SEVEEFYQHG HDDEHVSSEV GDNQNKRNNS LERKRNVEET VQDLMEEDKL RDQDQGQVEE  240
ASMGNKINSI NVGKVGNVED DAKSSSSSSL MMIMREKKKR KRKKEKERFG VLKGFCEGLV  300
RNMIAQQEEM HKKLLEDMVK TEEEKIAREE DWKKQEMERL NKEVEIRKQE QAMASDRNTN  360
IIKFISKFTD QDLDVEIPTS AFHDPSSLAL PQTQGRKKFQ TSSSLLHQTL TPHNPLTNDN  420
SLEPTSTKTL KTKTQNPKPP KSDDKSDLGK RWPKDEVLAL INIRRSISSM NDDDHKDGNS  480
LSSSSKAVPL WERISKKMLE VGYKRSAKRC KEKWENINKY FRKTKDVNKK RPLDSRTCPY  540
FHQLTAMYSQ PSTGTTITAT ATSAGDLQTR PEVGSEDPDI PAPMHVDADG AGDKSNVPFS  600
GFDLEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277282KKRKRK
2277283KKRKRKK
3278286KRKRKKEKE
4279283RKRKK
5279284RKRKKE
6279285RKRKKEK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g029890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0004610.0BT000461.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
GenBankBT0083890.0BT008389.1 Arabidopsis thaliana At5g28300 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019084000.10.0PREDICTED: trihelix transcription factor GTL2-like isoform X1
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A178UB250.0A0A178UB25_ARATH; GT2L
STRINGXP_010455171.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]