 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa08g029890.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
Trihelix |
| Protein Properties |
Length: 607aa MW: 69685.4 Da PI: 6.9522 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa08g029890.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 52 | 1.9e-16 | 97 | 165 | 2 | 76 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76
W+ +evlaL+++r+ +e+++ + We+ s+k++e gf+rsp++Ckek+e+ ++ry + ++++++ ++++
Csa08g029890.1 97 WCSDEVLALLRFRSTVENWFPEF-----TWEHTSRKLAEVGFKRSPQECKEKFEDEERRYFNGNNNNNNT-NDHQ 165
********************998.....9*********************************99999984.4443 PP
|
| 2 | trihelix | 103.6 | 1.5e-32 | 451 | 545 | 1 | 86 |
trihelix 1 rWtkqevlaLiearr..........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85
rW+k+evlaLi++rr +++++l++++++ plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+tcpyf+ql
Csa08g029890.1 451 RWPKDEVLALINIRRsissmndddhKDGNSLSSSSKAVPLWERISKKMLEVGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRTCPYFHQL 544
8**************99999999888888999999*********************************************8.9***********9 PP
trihelix 86 e 86
+
Csa08g029890.1 545 T 545
8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding |
| GO:0005516 | Molecular Function | calmodulin binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 607 aa
Download sequence Send
to blast |
MFDGGVPEQI HRFIASPPPA SPLPPHQSAA ERSLPFPISF ASYNTNHQAQ HILSLDSRKI 60
IHHHHHHHHH DIKDGGPTPA EWICHTDHDG DNHHHPWCSD EVLALLRFRS TVENWFPEFT 120
WEHTSRKLAE VGFKRSPQEC KEKFEDEERR YFNGNNNNNN TNDHQHISNY NNKGNNYRIF 180
SEVEEFYQHG HDDEHVSSEV GDNQNKRNNS LERKRNVEET VQDLMEEDKL RDQDQGQVEE 240
ASMGNKINSI NVGKVGNVED DAKSSSSSSL MMIMREKKKR KRKKEKERFG VLKGFCEGLV 300
RNMIAQQEEM HKKLLEDMVK TEEEKIAREE DWKKQEMERL NKEVEIRKQE QAMASDRNTN 360
IIKFISKFTD QDLDVEIPTS AFHDPSSLAL PQTQGRKKFQ TSSSLLHQTL TPHNPLTNDN 420
SLEPTSTKTL KTKTQNPKPP KSDDKSDLGK RWPKDEVLAL INIRRSISSM NDDDHKDGNS 480
LSSSSKAVPL WERISKKMLE VGYKRSAKRC KEKWENINKY FRKTKDVNKK RPLDSRTCPY 540
FHQLTAMYSQ PSTGTTITAT ATSAGDLQTR PEVGSEDPDI PAPMHVDADG AGDKSNVPFS 600
GFDLEF*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 277 | 282 | KKRKRK |
| 2 | 277 | 283 | KKRKRKK |
| 3 | 278 | 286 | KRKRKKEKE |
| 4 | 279 | 283 | RKRKK |
| 5 | 279 | 284 | RKRKKE |
| 6 | 279 | 285 | RKRKKEK |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT000461 | 0.0 | BT000461.1 Arabidopsis thaliana Unknown protein mRNA, complete cds. |
| GenBank | BT008389 | 0.0 | BT008389.1 Arabidopsis thaliana At5g28300 gene, complete cds. |
