PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g029690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 429aa MW: 46628.1 Da PI: 4.701 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 118.3 | 4.1e-37 | 124 | 222 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 lfqrlw++eDei lL+G++d+ ++++g s++ d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq +f++s+k Csa08g029690.1 124 LFQRLWTDEDEIELLRGFLDYiTSHRGYSSHPpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQATFDISRK 218 79*******************9999***99999************************************************************** PP DUF573 95 iWgs 98 iW++ Csa08g029690.1 219 IWNQ 222 **85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 7.9E-34 | 125 | 221 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MASDQRDTVF SVESPDLEDG GGGSGGGGGG GETESDEDVV IPEPNEAEED DPEYEDLNSP 60 SMVSAISTAP AAAKSSSTTG TVTVALPAGS AVPVASIPSD SDQKWHRMTE VVHQRPPIDD 120 SRRLFQRLWT DEDEIELLRG FLDYITSHRG YSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE 180 KLRRLKKKYR NVMSKISSGK EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNSVMDFEET 240 NHVNNTNGSS SFNISMGNAN ADVVDLENGL EKKVTMSRKR SRSRIGKMDE DKPVLAPCDG 300 GGMPPNAVNL NENVGEFSDG RNLGGLIEET VKNCVSPMIK EMMNGTTGMM MAAMGGFPGG 360 GGGAHALGVL SPMLMPSMNL GFGGKGAGDE RWRRQQILEL EVYSRRLELV QEQIRATVNE 420 LKTFPNGG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 278 | 283 | KRSRSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g029690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010421672.1 | 0.0 | PREDICTED: probable transcription factor At5g28040 | ||||
Swissprot | F4K5T4 | 0.0 | STKLU_ARATH; Probable transcription factor At5g28040 | ||||
TrEMBL | R0H766 | 0.0 | R0H766_9BRAS; Uncharacterized protein | ||||
STRING | XP_010421672.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3098 | 27 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 0.0 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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