PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g027490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C3H | ||||||||
Protein Properties | Length: 145aa MW: 16429.3 Da PI: 8.7306 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.3 | 1.3e-08 | 57 | 79 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 lC++f + +C++G++C++ H++ Csa08g027490.1 57 LCNRFITSNFCPFGNSCRYLHPQ 79 8********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 0.0016 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 6.5E-12 | 4 | 46 | No hit | No description |
Pfam | PF06220 | 2.1E-8 | 5 | 37 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 13.169 | 52 | 80 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.09E-6 | 56 | 81 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-5 | 57 | 79 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-6 | 57 | 79 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MPSGKYYCDY CEKEFQDTQV ARKRHLQSKP HLRAKALWYS SSSDLNPQVS NFGTKGLCNR 60 FITSNFCPFG NSCRYLHPQN NTGSTGFTNN TQPHADMINQ HIQESTLNRD FVSGRVRTGW 120 FDLPPSLKPP PEQGYPQLPS IDWG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g027490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ000732 | 5e-46 | AJ000732.1 Arabidopsis thaliana ASKalpha gene. | |||
GenBank | CP002688 | 5e-46 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | F2P16 | 5e-46 | AF007270.1 Arabidopsis thaliana BAC F2P16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010421530.1 | 1e-106 | PREDICTED: zinc finger CCCH domain-containing protein 3-like | ||||
Swissprot | Q0JP11 | 1e-31 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | R0FCD4 | 6e-91 | R0FCD4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010421530.1 | 1e-105 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10474 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 3e-83 | C3H family protein |
Publications ? help Back to Top | |||
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