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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Csa08g023440.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family | CPP | ||||||||
| Protein Properties | Length: 1210aa MW: 137516 Da PI: 5.964 | ||||||||
| Description | CPP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | TCR | 46.4 | 7.8e-15 | 101 | 140 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
++k+CnCk+skClk+YCeCfa+g++C+ +C+C +C+N+ e
Csa08g023440.1 101 QQKRCNCKNSKCLKLYCECFASGSYCNGSCNCLNCHNNLE 140
79***********************************976 PP
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| 2 | TCR | 49.9 | 6.3e-16 | 185 | 224 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
k++kgC+Ckks ClkkYCeC++a++ Cse+CkC+dCkN e
Csa08g023440.1 185 KHSKGCHCKKSGCLKKYCECYQANVLCSENCKCQDCKNFE 224
589***********************************65 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM01114 | 3.1E-15 | 100 | 141 | IPR033467 | Tesmin/TSO1-like CXC domain |
| PROSITE profile | PS51634 | 36.818 | 101 | 225 | IPR005172 | CRC domain |
| Pfam | PF03638 | 2.1E-11 | 102 | 138 | IPR005172 | CRC domain |
| SMART | SM01114 | 4.4E-19 | 185 | 226 | IPR033467 | Tesmin/TSO1-like CXC domain |
| Pfam | PF03638 | 3.0E-12 | 188 | 223 | IPR005172 | CRC domain |
| Hamap | MF_03001 | 91.903 | 497 | 1206 | IPR011400 | Eukaryotic translation initiation factor 3 subunit B |
| SuperFamily | SSF54928 | 1.9E-8 | 502 | 582 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
| CDD | cd12278 | 3.42E-35 | 502 | 586 | No hit | No description |
| PROSITE profile | PS50102 | 8.996 | 503 | 590 | IPR000504 | RNA recognition motif domain |
| Gene3D | G3DSA:3.30.70.330 | 2.0E-7 | 523 | 582 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
| Pfam | PF00076 | 3.1E-5 | 526 | 580 | IPR000504 | RNA recognition motif domain |
| SuperFamily | SSF82171 | 1.14E-26 | 708 | 879 | No hit | No description |
| Gene3D | G3DSA:2.130.10.10 | 8.3E-9 | 710 | 866 | IPR015943 | WD40/YVTN repeat-like-containing domain |
| Pfam | PF08662 | 6.7E-65 | 898 | 1098 | IPR013979 | Translation initiation factor, beta propellor-like domain |
| Gene3D | G3DSA:2.120.10.30 | 5.0E-11 | 908 | 1095 | IPR011042 | Six-bladed beta-propeller, TolB-like |
| SuperFamily | SSF82171 | 1.14E-26 | 964 | 1094 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006413 | Biological Process | translational initiation | ||||
| GO:0005852 | Cellular Component | eukaryotic translation initiation factor 3 complex | ||||
| GO:0000166 | Molecular Function | nucleotide binding | ||||
| GO:0003743 | Molecular Function | translation initiation factor activity | ||||
| GO:0031369 | Molecular Function | translation initiation factor binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1210 aa Download sequence Send to blast |
MEEDSSSNEN PPQSDFSISA KIDSFQKSLE PPPPPTSPVK SSQESATEVT PPQKLPLPRF 60 VHNQVHMNQS GGNCRVSNQD PLTTSRGQTE LESIDNTPNK QQKRCNCKNS KCLKLYCECF 120 ASGSYCNGSC NCLNCHNNLE KEGSRQEAVT TILDRNPDAF KPKIAGSPHG IKDLQENARE 180 MLLGKHSKGC HCKKSGCLKK YCECYQANVL CSENCKCQDC KNFEGSEERH ALLHGPQLSE 240 TYIQQTTNAA VNRAIDMSGY LNPPESRKRK SKDALHSHVV QNQRANHVVR NGDTSLFSLP 300 NDKAVSGFTT CAYRSSLSNI IQPHHVRELC SLLVSKSVDV ANKLSGAKCE TDKRKDPSRD 360 TTQRGANVIN DSPDCVLDTN RIEEKPLSPA TRALMCDEEH EIGSEKDTFA RVKTSQEKED 420 TDTSSEVYLE QERQILSSFR DYLIQLSNRG SLNDGRAAQL GINWSEINLD SIQLPPGDDF 480 GIASDDEAVY HEDQSEFDTG FGNIIVVDHL PVVTREKYEK LEGVVKKIYN QLGVIRENGL 540 WMPVDPDTKK TLGYCLIEFN TAQEAQNAKE KTHGYKLDKS HIFDVNKFDD FDRLMNVKEE 600 WEPPQARPYV PAEAQNAKEK THGYKLDKSH IFDVNKFDDF DRLMNVKEEW EPPQARPYVP 660 AENYQKWLTD EKARDQLVIR HGADTEVYWN DPRQKMPVPV HKRPYWTESY VQWSPLGTYL 720 VTLHKQGAAV WGGADTFTRL MRYQHSMVKL VDFSPGEKYL VTYHSQEPSN PRDASKVEIK 780 VFDVRTGRMM RDFKGSADEF SIGGPGGVAG ASWPVFRWAG GNDDKYFAKL SKNTISVYET 840 ETFSLIDKKS IKVDNVVDIC WSPTDSILSL FVPEQGGGNQ PAKAALIQIP SKVELRQKNL 900 FSVSDCKMYW QSSGEYLAVK VDRYTKTKKS TYSGFELFRI KERDIPIEVL ELDNKNDKII 960 AFAWEPKGHR FAVIHGDQPR PDVSFYTMKT AQNTGRVSKL ATLKAKQANA LFWSPTGKYI 1020 ILAGLKGFNG QLEFFNVDEL ETMATAEHFM ATEILWDPTG RYVATAVTSV HEMDNGFTIW 1080 SFNGNLLYRT LKDHFFQLAW RPRPPSFLTA EKEEEIAKNL KKYSKKYEAE DQDVSLLLSE 1140 QDREKRKALK EEWEKWVMQW KSLHEEEKLA RQNLRDGEVS DVEEDEYEAK EVEFEDVIDV 1200 TEEIVQESM* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5a5u_B | 1e-157 | 492 | 1205 | 481 | 1115 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT B |
| 6fec_w | 1e-157 | 492 | 1205 | 481 | 1115 | Eukaryotic translation initiation factor 3 subunit B |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 265 | 270 | SRKRKS |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. {ECO:0000255|HAMAP-Rule:MF_03001}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Csa08g023440.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AF285834 | 0.0 | AF285834.1 Arabidopsis thaliana eukaryotic initiation factor 3B1 subunit (TIF3B1) mRNA, complete cds. | |||
| GenBank | AF378883 | 0.0 | AF378883.1 Arabidopsis thaliana AT5g27640/F15A18_100 mRNA, complete cds. | |||
| GenBank | AY102149 | 0.0 | AY102149.1 Arabidopsis thaliana AT5g27640/F15A18_100 mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019083958.1 | 0.0 | PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X1 | ||||
| Swissprot | Q9C5Z1 | 0.0 | EIF3B_ARATH; Eukaryotic translation initiation factor 3 subunit B | ||||
| TrEMBL | D7M4L0 | 0.0 | D7M4L0_ARALL; Eukaryotic translation initiation factor 3 subunit B | ||||
| STRING | XP_010421436.1 | 0.0 | (Camelina sativa) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G25790.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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