PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g017630.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 265aa MW: 28322.3 Da PI: 10.3911

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g017630.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.9	1.8e-38	36	159	3	133
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s +sn+s + Csa08g017630.1 36 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASVSIRGSNNSTPlssslldhk 129 79**************************************************************9999777.33333344433333444444444 PP TCP 89 ......kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + + +r ra e +++ ++++ Csa08g017630.1 130 pttllgS---------------------SSPFILGKRVRADEDSHNHNNNN 159 4445442.....................32222333333333222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.4E-34	41	162	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	41	95	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MSINNNNNNN GVMISSSSNG SASLIEQQQQ SSSVVVKKPP AKDRHSKVDG RGRRIRMPII 60 CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTASV SIRGSNNSTP 120 LSSSLLDHKP TTLLGSSSPF ILGKRVRADE DSHNHNNNNN SSGGKDESFT TTTPAGFWAV 180 PARPDFGQVW SFTGGGAPVQ EMFLQQQHHQ QPLFVHHHQQ QQQQAAMGEA SAARVGNYLP 240 GHLNLLASLS GGSPGSGRRD EDPR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g017630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010421128.1	0.0	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	1e-129	TCP7_ARATH; Transcription factor TCP7
TrEMBL	D7M1Q2	1e-125	D7M1Q2_ARALL; Uncharacterized protein
STRING	XP_010421128.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-84	TCP family protein