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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g017610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 263aa MW: 30878.9 Da PI: 7.0023 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.5 | 1.5e-22 | 23 | 73 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++ rqvtfskRrng++KK EL +LCda + +i+fs tgk e++s Csa08g017610.1 23 KKIENQTARQVTFSKRRNGLIKKTRELAILCDAHIGLIVFSATGKRSEFCS 73 68**********************************************986 PP | |||||||
2 | K-box | 62.7 | 1.4e-21 | 96 | 180 | 10 | 94 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 ++ ++e+l++e++ L++ei nL+ +R + G dL s+ eL Le+qLe+s+ k+R++Knel+ +q+e+l +k+++l+e+n ++ Csa08g017610.1 96 HQDDQEQLYHEMEALRREICNLELHLRPYHGHDLASIPPHELDGLERQLEHSVLKVRERKNELMQQQLENLSRKKRMLEEDNDNM 180 5667899***************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.3E-36 | 15 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.156 | 15 | 75 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.2E-30 | 16 | 106 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.24E-41 | 16 | 93 | No hit | No description |
PRINTS | PR00404 | 2.6E-25 | 17 | 37 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-22 | 24 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-25 | 37 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-25 | 52 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-21 | 96 | 184 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.097 | 100 | 190 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MEEEGGSNKR KKRVMGRGKI EIKKIENQTA RQVTFSKRRN GLIKKTRELA ILCDAHIGLI 60 VFSATGKRSE FCSEHNKMPQ LIDRYLQTNG LRLPDHQDDQ EQLYHEMEAL RREICNLELH 120 LRPYHGHDLA SIPPHELDGL ERQLEHSVLK VRERKNELMQ QQLENLSRKK RMLEEDNDNM 180 CRWLHEHRAA IEFQQAGIET KPGEFLQFLE QVQYYTNDHQ QQQQQQQNSL LQLATQLPSE 240 IDPNYHLQLA QPNLQNDPAP KE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the developmental regulation of the endothelium and in the accumulation of proanthocyanidins (PAs) or condensed tannins which give the seed its brown pigmentation after oxidation (PubMed:12368498, PubMed:16080001). Necessary for the normal activation of the BANYULS promoter in the endothelium body (PubMed:12368498). Is required, together with AGL11/STK for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). Interacts genetically with AGL1/SHP1 and AGL5/SHP2 in a partially antagonistic manner and represses AGL1/SHP1, AGL5/SHP2, and AGL8/FUL during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). Mediates the crosstalk between endothelium and nucellus to ensure proper seed formation. Functions redundantly with AGL63/GOA to repress nucellus growth and promote its degeneration. Represses the negative regulator of autophagy and programmed cell death HVA22D in the proximal nucellus (PubMed:27233529). Binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:16080001). {ECO:0000269|PubMed:12368498, ECO:0000269|PubMed:16080001, ECO:0000269|PubMed:22176531, ECO:0000269|PubMed:27233529, ECO:0000269|PubMed:27776173}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g017610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ318098 | 0.0 | AJ318098.1 Arabidopsis thaliana mRNA for putative MADS-domain transcription factor (abs gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010421124.1 | 0.0 | PREDICTED: protein TRANSPARENT TESTA 16-like isoform X2 | ||||
Swissprot | Q8RYD9 | 1e-145 | TT16_ARATH; Protein TRANSPARENT TESTA 16 | ||||
TrEMBL | A0A075E1U4 | 1e-151 | A0A075E1U4_LEPCM; MADS-box DNA-binding domain transcription factor AGL32 | ||||
STRING | XP_010421124.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6506 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 1e-142 | MIKC_MADS family protein |